| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2418 |
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| Symbol | |
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| ID | 5695266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 2916172 |
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| End bp | 2918655 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641265024 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001530299 |
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| Protein GI | 158522429 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTGT CTTTTCTTCG TCACCGCTGG CAGGCCGGCG CCGTGCTGAT TCTATTGGCC
GCAACAGCCG TTCTGATCTA TTCCAACACA CTGACCGCGC CGTTCACCTT TGACGACGGC
CACAACATTC TGGATAACCT GAATATCCGC ATGACCGGGC TTTCCATCGA CAGCCTTATC
GACGCGGCCA CCGTCCAGAC CCGGCGGCCT GTTGCCAGCC TCACCTTTGC GCTCAACTAC
TATTTTCACG GTTATGACGT GACCGGGTAT CACGTGGTCA ACATCGCCAT CCACATTCTT
GCCGGCTTTC TGATGTTCCT GGTGGTCCGC CACACACTGG GCCTTACGGG CAATGAAAAA
AAAGAGCTGA TCGCTGCCCT GGCAGCCCTG GTCTGGCTCG TCAACCCGGT CCATACCCAG
TCAGTGACGT ATATCGTCCA GCGCATGACC GCCCTGGCCA CCCTCTTTTT TCTTTTCGCC
CTCTACCTTT ATATAAAGGG CCGGCTCCGG CAGCGGACCG GCCGCCCCCT TGGCATTCTC
TTTTTTGCCC TCTGCGGCCT GTCCGGCATC CTGGCTGTGC TTTCCAAGCA GATCGCCGCC
ACCCTGCCCT TTTTTGTTCT GGTCTATGAG TGGTATTTTT TCCAGGACCT GGATCGGGCA
TGGATTAAAC AACAGGCAAA GTGGATCGGT GGAGCCGTGT TTATCATTGG CGCGCTTGCG
GCAATATACC TGGGCGCCTC CCCGATAGAA AAAATCATGG CCATGTACGA CTCCCAGGAC
TTTACCATGG GCCAGCGGCT TTTAACCGAG CCCAGAGTAA TATTTTTATA CCTTTCGCTG
CTCTTTTTTC CGTACCCGGC CCGGCTCAAT CTGGACTATG ACTTTCCCGT GTCTGTCTCC
CTGATCGACC CGTTCACCAC CCTGGTCTCC ATCCTCGGCC TGATCGCACT GCTGGGGGCC
GCTGTTGTCA CGGCAAAAAG ACAGCGGCTG GTCTCCTTTG CCATTGTCTG GTTTTGCGGC
AATCTGGTAA TCGAGTCCTC TTTTATCGGT CTGGCCCTGG TGTTCGAGCA CCGCACCTAC
CTGCCCTCTG TGTTTGTAGT CGCGGCCCTG GTCTGGGCCG CCATTACATA TATTCGGCAC
AGGCCCCTGG TCATTGGGTT TCTCTGCGCC GTCACAATGA TCTTCGGCTG CTGGACATTT
CAGAGAAACA CCATCTGGGC CGATGATACG GCCCTGTGGC GGGACGTGAC AGAAAAATCC
CCCAACCTGG CCCGGCCCTG GAACAACCTG GGCCTGGCCC TGAAAAACCA GGGTCAGACG
GACCAGGCCA TGGCCATGTA CAACAGAGCA ATCGAAATCG ATCCCGGCTA CATCCACCCT
TACAACAACC TGGGTGCCCT GTTTCTGGAA ACCGGCCAAC CGGAAAAGGC CAGGCCCCTT
CTTGAAAAGG CCATTGAGAC AGACCCCCTC TTTATGATGG CATACAGCAA CCTGGCCATT
GCCTGCCACC GGCTCGGCGA CAGTGAAGCA GCCATGGCAT GGTGTGAGAA GGGATTACAA
ATAAGCCCGA ATGACCTGGA AATACAAAAC ACGCTGGGCG TTATTCTGCT GGCCCAAAGA
CGGGAGCAGG AGGCCGCCGT CCTGTTTGAA GCAGTGCTGC AGAAAGACCC GGGCCACACC
GAGGCGCTGA TGAACCTGGC CCTGATTGCC GACAAACAGG GAGACCGGGA AAAAACCGCC
GCCCTTCTTG AAAAAGCGAT CCGCCTGGAC CCGGCGTCGG CCGAAGCCCG GTATCATCTG
GGCGAACTGC TGGCCCGCAC CGGCAATCCC GACAACGCCA TGGCCCAGCT TGAGCAGGCC
CTGCACCTGA AACCGGACCA TGCCCTGGCC CATAACGCCA TGGGAAATTT ATGGCTTCAG
GCCGGAAAAA CAGACAGGGC CATCGACCAC TACCAAAAGG CCATCGCCAT TGACCCCGGA
TTTGCCGCGG CCCACACCAA CCTGGCCGAT GCCCTGGTTC GAACCGGAAA GATCGACAGC
GCCCTGCATT ACCTTGAAAC CGTGGCCGCC TCCCGTCCGG ACGATGCCGG CCTGCTGCTT
AAAACCGGCA TCCTGCACCA GCAGAACGGA AACCTCCCGG CTGCCGAGAA CCTTTACCAA
AAAGCCCTGA GCATAGACCC CGGCTGCACC GCCTGCCTGA ACCGGCTGGG CATGATTCAC
GCCCAAGCCG GACGGCTCGA TAAGGCTGCC GGCTGTTTTG AAGAACTGGC CCTGCTGGTG
CCGGACAATC CCGTGATCCA TTACAACCTG GCCTGCCTCT ACGCCCGGCA GAACGAGGTG
GAGCCAGCCC TGACAAATCT AAAAAAAGCC CTGGATACCG GGTATGACAA CCTGGAACAA
ATCCGCACCG ACAGAGATCT GGACAATATC CGCGACACCG GCTTTTACAA AGACCTGGTG
CGAGTGAAGG AGCAGGGGCA ATGA
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| Protein sequence | MNLSFLRHRW QAGAVLILLA ATAVLIYSNT LTAPFTFDDG HNILDNLNIR MTGLSIDSLI
DAATVQTRRP VASLTFALNY YFHGYDVTGY HVVNIAIHIL AGFLMFLVVR HTLGLTGNEK
KELIAALAAL VWLVNPVHTQ SVTYIVQRMT ALATLFFLFA LYLYIKGRLR QRTGRPLGIL
FFALCGLSGI LAVLSKQIAA TLPFFVLVYE WYFFQDLDRA WIKQQAKWIG GAVFIIGALA
AIYLGASPIE KIMAMYDSQD FTMGQRLLTE PRVIFLYLSL LFFPYPARLN LDYDFPVSVS
LIDPFTTLVS ILGLIALLGA AVVTAKRQRL VSFAIVWFCG NLVIESSFIG LALVFEHRTY
LPSVFVVAAL VWAAITYIRH RPLVIGFLCA VTMIFGCWTF QRNTIWADDT ALWRDVTEKS
PNLARPWNNL GLALKNQGQT DQAMAMYNRA IEIDPGYIHP YNNLGALFLE TGQPEKARPL
LEKAIETDPL FMMAYSNLAI ACHRLGDSEA AMAWCEKGLQ ISPNDLEIQN TLGVILLAQR
REQEAAVLFE AVLQKDPGHT EALMNLALIA DKQGDREKTA ALLEKAIRLD PASAEARYHL
GELLARTGNP DNAMAQLEQA LHLKPDHALA HNAMGNLWLQ AGKTDRAIDH YQKAIAIDPG
FAAAHTNLAD ALVRTGKIDS ALHYLETVAA SRPDDAGLLL KTGILHQQNG NLPAAENLYQ
KALSIDPGCT ACLNRLGMIH AQAGRLDKAA GCFEELALLV PDNPVIHYNL ACLYARQNEV
EPALTNLKKA LDTGYDNLEQ IRTDRDLDNI RDTGFYKDLV RVKEQGQ
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