Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_2135 |
Symbol | |
ID | 5694978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | - |
Start bp | 2591744 |
End bp | 2593000 |
Gene Length | 1257 bp |
Protein Length | 418 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641264736 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_001530016 |
Protein GI | 158522146 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000329469 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCGATGT CAAAGGCTTT TGAAAATCGA CTTTTTCCCG TGCTTGACAA GGTGGCGGCC CATTACGGCA CCCCGTTCCA TATTTATGAC GAGGCCGGCA TCCGCGGCAC CGGAAAGGCC CTGCTGGACG CCTTTTCGTC AGTGCCGGGG TTCCGGGAGT ATTACGCGGT CAAGGCCCTG CCCAACCCCC GGATTCTGGA TATCATGCGC TCCATGGGGT TCGGGTTTGA CTGCAGCTCC ATTCCCGAGC TGGTGCTGGC CCGGCGGGCT GGGGCCATCG GTGAAGAGAT CATGTTTACG TCCAACAACA CCTCGGCCGA GGAGTTTGAG GCGGCCCTGG CCGATAGCGG CTGCATTCTG AACCTGGACG ACATCTCCCT GATTTACAAG GTGCCCAAGC TGCCCGACCT GGTTTGTTTC CGTTATAATC CGGGCGAGCG GCGCACCGGC AACGCCATCA TCGGTAACCC GGTGGAGGCC AAGTACGGCG TGGCCCACGA CCAGATCCTG GAAGCCTACC GGAAAGTCCG GGACATGGGG GCCCGGCGGT TCGGCCTGCA TGCCATGCTG GCCTCCAACG AGCGCAACCA CACCTACATG GTTACCACCG CCGAGATGCT GCTGGACCTG GTGCGGGACA TATCCGACAC CCTGGACATT CAGTTCGAGT TTGTCAATAT CGGCGGCGGC CTGGGCATTT CCTACCGACC CGGCGAGCCG CCCCTGGACC TTCCGGCCAT GGGCGCCCAG ATTTCCGATG TTTTTGAGCG GTTCGGCCGG GAGCGGCGCT ATATGCCGCG CCTTTACATC GAAAGCGGCC GCTACATGAC CGGCCCCCAC GGCGCGCTGG TGACCCGGGT GATCAACCGC AAGCATATCT ATCGCACCTA CGTGGGGGTG GACGCCTGCA TGTCGGCCCT GATGCGGCCC GCCATTTACG GGGCTTACCA CCATATCTCT CTTCCGACAA AAAGCGGCGG CCCCGTCGAA ACCGTGGACG TGGTGGGGGC CCTGTGCGAA AACAATGACA AGTTTGCCGT GCAGCGGGAA CTGCCCGTGG CCGCCGAAGG GGACCTGATG GTGATTCACG ACACCGGGGC TCACGGCATC GCCATGGGCT TTAACTACAA CGGCCGAATG CGCCCCATGG AACTGCTGCT GCGCGAAGAC GGCAGCGTTG AGCTGATTCG CCGGGCCGAG ACAGTGGAAG ACTATTTTGC CACCCTGGCG TTTGAAAAGA GCGTCCTGCG GCCGTAG
|
Protein sequence | MPMSKAFENR LFPVLDKVAA HYGTPFHIYD EAGIRGTGKA LLDAFSSVPG FREYYAVKAL PNPRILDIMR SMGFGFDCSS IPELVLARRA GAIGEEIMFT SNNTSAEEFE AALADSGCIL NLDDISLIYK VPKLPDLVCF RYNPGERRTG NAIIGNPVEA KYGVAHDQIL EAYRKVRDMG ARRFGLHAML ASNERNHTYM VTTAEMLLDL VRDISDTLDI QFEFVNIGGG LGISYRPGEP PLDLPAMGAQ ISDVFERFGR ERRYMPRLYI ESGRYMTGPH GALVTRVINR KHIYRTYVGV DACMSALMRP AIYGAYHHIS LPTKSGGPVE TVDVVGALCE NNDKFAVQRE LPVAAEGDLM VIHDTGAHGI AMGFNYNGRM RPMELLLRED GSVELIRRAE TVEDYFATLA FEKSVLRP
|
| |