Gene Dole_2135 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_2135 
Symbol 
ID5694978 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp2591744 
End bp2593000 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content62% 
IMG OID641264736 
Productdiaminopimelate decarboxylase 
Protein accessionYP_001530016 
Protein GI158522146 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0019] Diaminopimelate decarboxylase 
TIGRFAM ID[TIGR01048] diaminopimelate decarboxylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000329469 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGATGT CAAAGGCTTT TGAAAATCGA CTTTTTCCCG TGCTTGACAA GGTGGCGGCC 
CATTACGGCA CCCCGTTCCA TATTTATGAC GAGGCCGGCA TCCGCGGCAC CGGAAAGGCC
CTGCTGGACG CCTTTTCGTC AGTGCCGGGG TTCCGGGAGT ATTACGCGGT CAAGGCCCTG
CCCAACCCCC GGATTCTGGA TATCATGCGC TCCATGGGGT TCGGGTTTGA CTGCAGCTCC
ATTCCCGAGC TGGTGCTGGC CCGGCGGGCT GGGGCCATCG GTGAAGAGAT CATGTTTACG
TCCAACAACA CCTCGGCCGA GGAGTTTGAG GCGGCCCTGG CCGATAGCGG CTGCATTCTG
AACCTGGACG ACATCTCCCT GATTTACAAG GTGCCCAAGC TGCCCGACCT GGTTTGTTTC
CGTTATAATC CGGGCGAGCG GCGCACCGGC AACGCCATCA TCGGTAACCC GGTGGAGGCC
AAGTACGGCG TGGCCCACGA CCAGATCCTG GAAGCCTACC GGAAAGTCCG GGACATGGGG
GCCCGGCGGT TCGGCCTGCA TGCCATGCTG GCCTCCAACG AGCGCAACCA CACCTACATG
GTTACCACCG CCGAGATGCT GCTGGACCTG GTGCGGGACA TATCCGACAC CCTGGACATT
CAGTTCGAGT TTGTCAATAT CGGCGGCGGC CTGGGCATTT CCTACCGACC CGGCGAGCCG
CCCCTGGACC TTCCGGCCAT GGGCGCCCAG ATTTCCGATG TTTTTGAGCG GTTCGGCCGG
GAGCGGCGCT ATATGCCGCG CCTTTACATC GAAAGCGGCC GCTACATGAC CGGCCCCCAC
GGCGCGCTGG TGACCCGGGT GATCAACCGC AAGCATATCT ATCGCACCTA CGTGGGGGTG
GACGCCTGCA TGTCGGCCCT GATGCGGCCC GCCATTTACG GGGCTTACCA CCATATCTCT
CTTCCGACAA AAAGCGGCGG CCCCGTCGAA ACCGTGGACG TGGTGGGGGC CCTGTGCGAA
AACAATGACA AGTTTGCCGT GCAGCGGGAA CTGCCCGTGG CCGCCGAAGG GGACCTGATG
GTGATTCACG ACACCGGGGC TCACGGCATC GCCATGGGCT TTAACTACAA CGGCCGAATG
CGCCCCATGG AACTGCTGCT GCGCGAAGAC GGCAGCGTTG AGCTGATTCG CCGGGCCGAG
ACAGTGGAAG ACTATTTTGC CACCCTGGCG TTTGAAAAGA GCGTCCTGCG GCCGTAG
 
Protein sequence
MPMSKAFENR LFPVLDKVAA HYGTPFHIYD EAGIRGTGKA LLDAFSSVPG FREYYAVKAL 
PNPRILDIMR SMGFGFDCSS IPELVLARRA GAIGEEIMFT SNNTSAEEFE AALADSGCIL
NLDDISLIYK VPKLPDLVCF RYNPGERRTG NAIIGNPVEA KYGVAHDQIL EAYRKVRDMG
ARRFGLHAML ASNERNHTYM VTTAEMLLDL VRDISDTLDI QFEFVNIGGG LGISYRPGEP
PLDLPAMGAQ ISDVFERFGR ERRYMPRLYI ESGRYMTGPH GALVTRVINR KHIYRTYVGV
DACMSALMRP AIYGAYHHIS LPTKSGGPVE TVDVVGALCE NNDKFAVQRE LPVAAEGDLM
VIHDTGAHGI AMGFNYNGRM RPMELLLRED GSVELIRRAE TVEDYFATLA FEKSVLRP