| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2065 |
|---|
| Symbol | |
|---|
| ID | 5694908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 2517238 |
|---|
| End bp | 2518368 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641264666 |
|---|
| Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| Protein accession | YP_001529946 |
|---|
| Protein GI | 158522076 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000207699 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAA AAACACCATC CGCTGACACG CCTTTTATTC TTTCTGCTCT GGCTCCCGCC
ACCCTCTGCC GCGCCACCAT TGACGCTGTT GCCTCGGTGG ACACAACCCT GCTGGCCGAC
GCCGGCCGAA AAATCGACAA CAAGACAAAA CCCGCCGGCT CCCTGGGCCG GCTGGAAACC
CTGGCCGTTC AAATGTGCCT GGTCCAGAAC AGGCTGGACC CGGCCATTGG ACAGAAAAAC
CTTTTTGTGT TTGCCGGGGA CCACGGGGTC ACGGCGGAAG GGGTGTCCGC CTTTCCTTCA
GAGGTCACGG TCCAGATGGT ACTAAACTTT CTGGCCGGCG GGGCCGCCAT CAATGTGCTG
TGCCGTCACT ACGGCATTGA CATGAAGGTG GTGGACATGG GTGTGGCAGG GGCGTTTGAA
GACCACCCGG ACCTGGTCAA AAAGAAAGTG GCGCCGGGCA CGGAAAACCT GGCCCGGCAG
GTGGCTATGA GCGCCGACGC ATTAAAAACG GCCCTGGAAA ACGGCATGGC TGTTTTTCTG
GAGGCCCACG CCCGAAAGCC CATCGACATT GTGGGTATGG GCGAAATGGG CATCGGCAAC
ACCACCCCGG CAACGGCCAT CATCTGCGCC CTTACCGGCA TCTCTCCGGC CGAGGCCACA
GGCCGGGGCA CCGGCGTGGA CGACGACGGT TTGAAACGAA AGACCGCCGT GATTGAACAG
GCCCTGAAAC TTCATTGCCC GGATTCGAAA AACGGTTTTG AAGTGCTGCG CACCCTGGGC
GGGTTTGAAA TTGCGGGCAT GGCCGGGGCC ATTCTGGCCG CGGCGTCAAA ACAGACCGCC
GTGGTGCTGG ACGGCGTGAT TTCAACGGCC GCCGGGCTGG CGGCCTTTGT TATCTGTCCG
TCGATCAAGG GGTTTCTGAT CGCGGGGCAC CGGTCCGTGG AACCGGCGCA AAAGGCGGCC
CTGTCTTTTA TCGGGCTTGA GCCGGTGCTG GATCTTCAAA TGCGGCTGGG CGAAGGCACG
GGCGCTGTCA TGGCCATGGA TGCGGTGGCA GCGGCCTGCA AGATCATGAC CCAGATGGCC
TCCTTTGAAG GGGCCGGTGT GTCAACGGCT TCCGGCACGG CCACGGCATA G
|
|---|
| Protein sequence | MPKKTPSADT PFILSALAPA TLCRATIDAV ASVDTTLLAD AGRKIDNKTK PAGSLGRLET
LAVQMCLVQN RLDPAIGQKN LFVFAGDHGV TAEGVSAFPS EVTVQMVLNF LAGGAAINVL
CRHYGIDMKV VDMGVAGAFE DHPDLVKKKV APGTENLARQ VAMSADALKT ALENGMAVFL
EAHARKPIDI VGMGEMGIGN TTPATAIICA LTGISPAEAT GRGTGVDDDG LKRKTAVIEQ
ALKLHCPDSK NGFEVLRTLG GFEIAGMAGA ILAAASKQTA VVLDGVISTA AGLAAFVICP
SIKGFLIAGH RSVEPAQKAA LSFIGLEPVL DLQMRLGEGT GAVMAMDAVA AACKIMTQMA
SFEGAGVSTA SGTATA
|
|---|
| |