Gene Dole_2004 details

Gene Information

• Locus tag: Dole_2004
• ID: 5694844
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfococcus oleovorans Hxd3
• Kingdom: Bacteria
• Replicon accession: NC_009943
• Strand: +
• Start bp: 2426708
• End bp: 2428612
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 641264602
• Product: multi-sensor signal transduction histidine kinase
• Protein accession: YP_001529885
• Protein GI: 158522015
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.0000000423635
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAACGACG ATTTCAACCA TGACCATCAG GATCTGCTTT CCCAGATCGT TTCGGGCAGT 
CCGATTCCCA CTTTTGTGAT CGACCGGAAT CACCGGGTGA CCCACTTCAA CAAGGCCTGC 
GAAGTGCTTA CCGGGAGAAA GGCGGAAGAG ATCATTGGAA CCGACGGCCA GTGGCGGGCC 
TTTTATGCGG AAAAGCGCCC GGTGATGGCG GATATTGTTC TCGATGCCGC CATCGAAGAT 
ATCGCGGGGA TGCTTGAAAC CCATTACCAG GGGAAGTTCC GGGCCTCGTC GGTCAGGTCC 
GGGGCCTTTG AGGCCAGGGA TTTTTTCCCG GCCCTGGGCG AGGACGGGAA ATGGTTGTTT 
TTTACGGCAG CCCCCATCCG AAACGCGGAC GGAGATGTTA TCGGCGCCAT AGAGACCCTT 
CAGGACATCA CCCAGGAGAA GCGGGTGTCC CACCTGAACC GGTCCATGCT CCGGGTCAGC 
AAGGCCCTGC ACCGGTATTC GTATCTGGAT GACCTGTTGT CCTTTATCAG CCAGGAAATC 
AAAAAACTGC TGGGGGCGGA AGGGGCACTG GTGCTTTTAC TGGACGCCGA AACCAACGAG 
TTGTACACCT CGGGACTGGC CTATGATGAC CCGGACCGTG AAAAACGGAT GAAAGAAGTC 
CGCTTTTCCC TGGATGAGGT GTTGGCCGGG CAGGTGATTC GAACCGGCGA GCCGGTGGTG 
ATGCATGATG CCGAGGCTCT GCCCCAATAC GCGGAGCGGG ACAGAAAAAT CGGATACACC 
ACCCGGAGTC TCCTGGAAGT GCCCCTCGTG GTCGAGGACC GCACCATCGG TGTGCTTGCC 
GGTATCAACA AAAAAGAGGG GCGCTTCTCC GGGCAGGATA TGGATGCCCT TGCCGCGCTG 
GCCGGTACCG TGGCCCTGGC CATTGAGAAC ACCCGGCATC AAGAGGGGCT CCGGGCCTTT 
TATCGTGAGG TGCAATCCCT GAACACGGCC AAGGGCAAGA CGATCAACCA CTTGTCCCAT 
GAATTGAAAA CCCCGGTGGC CATTCTGTCC CAGGCCCTGC CCCTGCTCGA AGACGAGCTT 
GCGGTTGTGC CCGAGGATAA CTGGAAACCC TATGTGGAAA TTATCGAGCG CCAGCTTAAC 
CGCATCGTCG CAATCGAAAG CGAGGTGTCG GACATCATTA CGGACAAAGA ATACAAAGTT 
GCGGGGCTTT ACAACGGCAT GGTCCTTCAA TGTGCCGACC TGCTTTCCGT TCTGGCCTTG 
AAACATCAGG GCAAAAAAGA CATGGTGGAC CAGATTACCA CCCATATTCG GGAACTGTTT 
TCACCGAAAA CCATGGTGGC CGCCACCATT GATCCCGGAA CGTTTATCCA GGGCCGTCTC 
CGGGCGCTTG AACCCGGCTT TGCCCACCGG CAGGTGGATG TGCGTGTTCT TTTAGAGCCC 
ACCCGGCCCA TTCAGATTCC AGAGGTGATT TTTGAAAAAG TCATGGACGG CCTGATCCGA 
AACGCAATCG AAAACACACC TGATGAAGGC CGTGTGGATG TGGCCGTCTT TGAAAAAGGA 
GGGTTGGTTC AGGTCTCGGT GAAGGATTAT GGGGTGGGCA TTCGAAAAGA CCATCAGGCC 
AGAATTTTCG AAGGCTTTTT CCCTACCCAG GACATTCTGG CTTACAGCAC CCGGAAGCCT 
TTTGATTTCA ACGCCGGCGG CAAAGGCGCC GATCTGCTCC GTATGAAGAT TTTTTCCGAA 
ACCTGCGGTT TCACCCTGGA CATGGCGTCT ACCCGGTGTG CTGTGCTGGA TGCGCCCCGC 
CAGGAATGCC CGGGCCGGAT ATCTGCGTGC CCTTCCGCCA CCGTAACCCG CCCCTGCCAT 
GAATCAGGCG GAACCGAATT CATCCTCTTT TTCCACGGAG CCTGA 

 

Protein sequence

MNDDFNHDHQ DLLSQIVSGS PIPTFVIDRN HRVTHFNKAC EVLTGRKAEE IIGTDGQWRA 
FYAEKRPVMA DIVLDAAIED IAGMLETHYQ GKFRASSVRS GAFEARDFFP ALGEDGKWLF 
FTAAPIRNAD GDVIGAIETL QDITQEKRVS HLNRSMLRVS KALHRYSYLD DLLSFISQEI 
KKLLGAEGAL VLLLDAETNE LYTSGLAYDD PDREKRMKEV RFSLDEVLAG QVIRTGEPVV 
MHDAEALPQY AERDRKIGYT TRSLLEVPLV VEDRTIGVLA GINKKEGRFS GQDMDALAAL 
AGTVALAIEN TRHQEGLRAF YREVQSLNTA KGKTINHLSH ELKTPVAILS QALPLLEDEL 
AVVPEDNWKP YVEIIERQLN RIVAIESEVS DIITDKEYKV AGLYNGMVLQ CADLLSVLAL 
KHQGKKDMVD QITTHIRELF SPKTMVAATI DPGTFIQGRL RALEPGFAHR QVDVRVLLEP 
TRPIQIPEVI FEKVMDGLIR NAIENTPDEG RVDVAVFEKG GLVQVSVKDY GVGIRKDHQA 
RIFEGFFPTQ DILAYSTRKP FDFNAGGKGA DLLRMKIFSE TCGFTLDMAS TRCAVLDAPR 
QECPGRISAC PSATVTRPCH ESGGTEFILF FHGA