Gene Dole_1880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_1880 
Symbol 
ID5694720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp2278858 
End bp2279709 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content59% 
IMG OID641264478 
Productapurinic endonuclease Apn1 
Protein accessionYP_001529761 
Protein GI158521891 
COG category[L] Replication, recombination and repair 
COG ID[COG0648] Endonuclease IV 
TIGRFAM ID[TIGR00587] apurinic endonuclease (APN1) 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAATATG TGGGCGCCCA CGTCAGTGCC GCGGGCGGAG TTGAAAACGC CCCCCTTGCC 
GCGGCCCGGA TCAGGGCCAG GGCCTTTGCC CTGTTTACCA AAAACCAGCG CCAGTGGCGG
GCCGCCCCTC TTAAAGAAGA GAGTATTACC GCGTTCAAAC GCAACTGCGC CGACCACGGC
TACCGTCCGG ATCACATCCT GCCCCACGAC AGCTACCTTA TAAACCTGGG CCACCCCGAG
GCCGATAACC TTAAAAAATC GCGAACCGCC TTTTTTGATG AAATGAAGCG GTGCGAGCAA
CTGGGCCTGA AGTTTTTAAA TTTTCATCCC GGCAGCCACC TGGGAAAAAT TTCCGAAGAC
GCCTGTCTTT CCCGTATCGC CGAATCCGTC AACATGGCCC TGGACCGGAC AGCCAGCGTG
TGCGCGGTCA TTGAAAACAC CGCCGGCCAG GGCACCAACC TGGGCCACCG GTTCGAGCAC
CTGGCCCGCG TCATCGATCA GGTAGAAGAC AAGACCCGGG TTGGCGTGTG CCTGGACACC
TGCCACACCT TTGCCGCCGG CTACGACCTG CGCACGGCGT CCACCTATGA GGCCACACTG
AAGGCCTTTG ACCGGGTGGT GGGGCTTAAA TACCTGCGGG CCGTTCACCT GAACGACTCC
ATAAAAGGTT TGGCCTCCCG GGTGGACCGA CACCAGAGCC TGGGGCAGGG CGCCTTAGGG
CTTGACGTGT TTCGCCGGAT CATGAACGAC AGACGGTTTG AGAACATGCC CCTGATCCTG
GAGACAAAAG ACGCCACCAT CTGGGAACAG GAGATCAAGT TGCTTTACGG TATGATAAAA
GGGGCGAAAT AG
 
Protein sequence
MKYVGAHVSA AGGVENAPLA AARIRARAFA LFTKNQRQWR AAPLKEESIT AFKRNCADHG 
YRPDHILPHD SYLINLGHPE ADNLKKSRTA FFDEMKRCEQ LGLKFLNFHP GSHLGKISED
ACLSRIAESV NMALDRTASV CAVIENTAGQ GTNLGHRFEH LARVIDQVED KTRVGVCLDT
CHTFAAGYDL RTASTYEATL KAFDRVVGLK YLRAVHLNDS IKGLASRVDR HQSLGQGALG
LDVFRRIMND RRFENMPLIL ETKDATIWEQ EIKLLYGMIK GAK