| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1662 |
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| Symbol | |
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| ID | 5694499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 1977295 |
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| End bp | 1979175 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641264257 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_001529543 |
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| Protein GI | 158521673 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.184143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGGCTCT TAGAAACCAT TGACTCCCCC GCGGACCTGA AAAAGCTGCC GGTGTCCGAC
CTGCCGGCCC TGGCCGAGGA GATTCGCGAG CTGATTGTTC GCGTGGTCTC TGAAACCGGC
GGCCACCTGG CCTCCAGCCT GGGCGCCGTG GAACTGGCCA TTGCCATTCA CTACGTGTTT
GACGTACCCA ACGACCGGGT GATCTGGGAT GTGGGCCACC AGTCCTATGC TCACAAGATT
CTCACCGGAC GACGGGAGCA GTTTTCCACC CTGCGGCAGC ACGGGGGCCT GTCCGGGTTC
ACCAAACGCA GCGAAAGCCC GTTTGACTCC TTTTCCACTG GCCACAGCGG CACCTCCATT
TCGGCCAGCC TGGGGTTTCT CTGCGCCAAG CACCAGCGCA ACGACCCGTC CAAGGTGGTG
GCCGTGATCG GCGACGGCTC CATGACGGCG GGCCTTGCCT ACGAGGGACT CAACCAGGCA
GGGGACCGGC ACAAGGACAA GAACCTCATC GTTATCTTAA ACGAAAACGA CATGTCCATA
TCTCAAAACG TGGGGGCCCT CTCCTCGTTT TTAAGCCGCA CCCTGTCGGC CACCTATCTT
CAGGACTGGA GAAAAGAACT GGGCGAACTG CTGCGGTCCC TGCCCGGCAT CGGCGACGAT
GTCTACCAGT TTGCCAAGCG GTCCGAAGAG TCGTTCAAAA CCTTTGTCAC CCCGGGCATG
CTGTTTGAGG CTTTCAACCT CGAATATTTC GGCCCCATTA ACGGCCACAA AATCAAACAA
CTGGTCAATA TTCTGCAAAA CATCCGGGAA ATCCGGGAGC CGGTGCTGCT GCACGTCACC
ACCACCAAGG GCAAAGGGTA TGAACCGGCG GAAAGAGATC CGGCCTATTT CCACGGCGTG
GGCGCCTTTG AAATCACAAC CGGCAGCAAA CGGCCGGATG CGGCTCCCTG CCCGTCCACC
TACACTCAGG TCTTCGGCCG GACCATGGTG GAGCTGGCGG AAAAAGACCC GGCCATCGTG
GCCGTGACCG CTGCCATGCC CGAAGGCACG GGCCTTGCCG AATTTGCCCA AAGGTTTCCA
GACCGGTTCT ACGACGTGGG CATTGCCGAG CAGCACGGCG TCACTTTTGC CGCGGGCATG
GCCGCGGACG GCCTGCGACC GGTGGTGGCC ATCTACTCCA CATTCCTGCA GCGAAGCTAC
GACCAGATCA TCCACGACGT CTGCCTGGAG TCCCTGCCCG TCACCTTTGC CATTGACCGG
GCCGGCATCG TGGGCGAGGA CGGCCCTACC CACCACGGCC TGTTCGATCT TTCCTACCTG
CGCAGCATGC CCAATATGAC GATCATGGCG CCGGCCGACG AAAACGAACT GCGCCGCATG
CTGGTCACCG CCATTTCCCA CAACGGCCCC GCGGCGGTCC GCTACCCCAG GGGAAAAGGC
ACGGGTGCCG CCTTGGCCGA CCCCCTGTTG CCGGTCTCCA TCGGAAAAGC AAAAATCCTT
ACGAAAGGCG GCGACATTCT GATTCTGGCC ATTGGCCGCA CGGTATGCGA AGCCATGGCG
GCCCGGCAGC AGCTTGAGAC CGAAGGCATC TCCGCCACGG TGGTCAACTG CCGGTTTGTC
AAACCCCTGG ATGAGGAACT GATCTGCGAC CTGGCCCGCG CCATCCCCCG GATACTGACA
GTGGAAGACA GCATGCTGGC CGGCGGATTT TCCAGCGCCG TTCTGGAGTG TCTCAATGAT
CACCGGGTAA CCGGCGTGAC CGTAAAACGG CTGGGCATCG GCGACACCTT TGTGGAACAC
GGTTCCCAGG AGATCCTGCG GGCCAAGTAT GCCATTGACG CCAGGGCCAT TGTGGTGGCG
GCAAAGGAGC TGATGGCCTA G
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| Protein sequence | MGLLETIDSP ADLKKLPVSD LPALAEEIRE LIVRVVSETG GHLASSLGAV ELAIAIHYVF
DVPNDRVIWD VGHQSYAHKI LTGRREQFST LRQHGGLSGF TKRSESPFDS FSTGHSGTSI
SASLGFLCAK HQRNDPSKVV AVIGDGSMTA GLAYEGLNQA GDRHKDKNLI VILNENDMSI
SQNVGALSSF LSRTLSATYL QDWRKELGEL LRSLPGIGDD VYQFAKRSEE SFKTFVTPGM
LFEAFNLEYF GPINGHKIKQ LVNILQNIRE IREPVLLHVT TTKGKGYEPA ERDPAYFHGV
GAFEITTGSK RPDAAPCPST YTQVFGRTMV ELAEKDPAIV AVTAAMPEGT GLAEFAQRFP
DRFYDVGIAE QHGVTFAAGM AADGLRPVVA IYSTFLQRSY DQIIHDVCLE SLPVTFAIDR
AGIVGEDGPT HHGLFDLSYL RSMPNMTIMA PADENELRRM LVTAISHNGP AAVRYPRGKG
TGAALADPLL PVSIGKAKIL TKGGDILILA IGRTVCEAMA ARQQLETEGI SATVVNCRFV
KPLDEELICD LARAIPRILT VEDSMLAGGF SSAVLECLND HRVTGVTVKR LGIGDTFVEH
GSQEILRAKY AIDARAIVVA AKELMA
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