| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1520 |
|---|
| Symbol | |
|---|
| ID | 5694357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 1813134 |
|---|
| End bp | 1815467 |
|---|
| Gene Length | 2334 bp |
|---|
| Protein Length | 777 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641264115 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001529401 |
|---|
| Protein GI | 158521531 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACG ACAGACAGGC CACCGGGGCA ATAAAGGACT ACGTCTATAC GGTCATCATT
GAAAACGGCG TGGCCGTGGC GACAAAACAG GGGCCCGGCT GTGAGGCGGT AACAGGCTTT
GGCGCCGATG CCTTTGAAAA AGACCCTGAA CTCTGGCTGA GCCGTATACC GGACGAGGAC
CGCGACCGCG TCACCGGAAT GATCAATCTT GCCGCCGCCG GCAGGGATGC GGTCTCCGTC
GAGCACCGGT TCGTCCATCA GGACGGGCGC ACGCGCTGGC TAAGAAACAC GCCGGTCCTC
CACTGGGAGG GGCCCGGCCC CCGTTCGCGG TGTCTGAGCC TGATTCAGGA CATTACCGAG
CACAGAGAGG CCGATGCGGC CCTTCGGGAG AGCCGGACCA TGCTCAACCG GGTGATCGAC
ACCGTGCCCC AGTCCATCTT CTGGAAAGAT ACAAAAGGTC GTTACCTGGG CTGCAACAGG
GCCTTTGCAA AGGCCGCCGG TCTTGACCAC CCCCGTCAGA TCGTGGGCAA GACCGATTTT
GAGCTGCCAT GGCCCAGGGA GACGGCAGAA AGCTACCGCG CATCCGACCG GGAGGTGCTG
GAAAGCAACA GTCCACGCCT TCATGTGGTT GAACCGATGC AGCAGGCGGA TGGCGAACGC
CTGTGGGTCA ACGTGTCAAA AGTACCCCTG GTGGATGAAA CCGGTCTCCC TTTTGCCGTG
CTGGGCATCT ACGAGGACAT CACCGAACGC AAGCAGATGG AAGATGAGCT GCTGCGGGAA
AAAACCTTTA TCGAGGCCAT TTTCAACAGT GCACCGGGCA TGCTGTATCT GTATGACACC
AATGAGCGGC TGGTCCGGTG GAACAAAAAA CATGAAACGA TGTCGGGCTA CACTTCCGAC
GAGTTAAACG GCATGCATAT CCTCAAGTGG TTCGAAAATG ATGAAAAAAG CATCAAGGCC
ATACTTGAGG GAGTTCAGGC AACCATGGAA AAGGGCTCCG GAGAGGCCGA GGCCGACCTG
CAGAAAAAGG ACGGCACCAC CATTCCCATG TATTTCACGG GCAGTCGATT AACCATTGAC
GACCAGCCCT ACCTCACCGG CATCGGCATC GACATCACCG AACGCCGGCG GGCCGCGGAA
GAAAAGGAAA AACTTCAGGC CCAGCTGCTT CAGGCCCAGA AAATCGAATC CGTGGGAAGG
CTGGCCGGCG GCGTGGCCCA CGATTTTAAT AACATGCTCA ATGTTATTCT GGGCCACGCG
GCCCTGGCAT TAAGTACCCT GGCCGATGAC GATCTCATGC GCGGCCACCT GGAACAGATT
CAAAAGGCCG CGGACCGGTC CGCCGGCCTA ACGCGCCAGC TTCTGGCCTT TGCCCGTAAA
CAGACTGTGG CGCCAAAGGT TCTTGAACTG AATGCCACCG TGGCCAGCAT GCTGGAGATG
CTGCTGCGGC TTATCGGTGA AGACATTGAC CTGGCCTGGC ATCCGGGCGC ACATCCAATG
CTGATAAAAA TGGACCCCTC CCAGGTCGAC CAGATTCTGG CCAACCTGTG CGTCAACGCC
AGGGACGCCA TTGAAGGCAC GGGAAAAATC ACCATTGAAA CCGGTACCGC GGATTTTGAT
GAGGCCTACT GCGCTGAACA CCCGGACTGC ATACCCGGCG CCTATGCCCT GCTGGCCATC
AGCGACAACG GTGCCGGCAT GGATCCCGAA ACCATATCCC ACCTGTTCGA GCCCTTTTTC
ACCACCAAGG AGATGGGCAA AGGCAGCGGC CTGGGCCTGG CCACGATCTA TGGCATTGTC
AGGCAGAACA ATGGATTTAT CAACGTATAC AGCGAACCGG GCACAGGAAC AACCTTCAAG
GTCTACCTGC TCCGGCATAC AGACGAAGGG ATGGCACCGG CACCGGTCAA AAAGGTCTTT
GCGCCCCTTG CCCGGGGCCA CGAAACCATC CTGCTGGTGG AAGACGAAGC CCTGCTGCTG
GACATGACCG CGACCATGCT CAGGCTCCAG GGCTACACGG TTCTGGCGGC TTCCACCCCG
GGAGAGGCCA TGCGCCTGGC CAGGGAGCAT GCCGGCGACA TTCACCTGCT GATGACCGAC
GTGGTCATGC CTGAAATGAA CGGCCGGGAC CTGGCCACCA GAGCGCTGTC CCTGCGGCCC
GGAATCAGGC TTCTGTTCAT GTCCGGCTAC ACGGCCAATG TCATTGCCCA CCACGGCGTG
CTGGACGACG GCGTTCACTT TCTTCAGAAA CCCTTTTCAG CCAAAGAGCT GGCCGCCAGA
GTGCGGGAGG CACTGGATGA AAACGACGGG GGCACACCAC CGGCGATCGA TTAA
|
|---|
| Protein sequence | MNDDRQATGA IKDYVYTVII ENGVAVATKQ GPGCEAVTGF GADAFEKDPE LWLSRIPDED
RDRVTGMINL AAAGRDAVSV EHRFVHQDGR TRWLRNTPVL HWEGPGPRSR CLSLIQDITE
HREADAALRE SRTMLNRVID TVPQSIFWKD TKGRYLGCNR AFAKAAGLDH PRQIVGKTDF
ELPWPRETAE SYRASDREVL ESNSPRLHVV EPMQQADGER LWVNVSKVPL VDETGLPFAV
LGIYEDITER KQMEDELLRE KTFIEAIFNS APGMLYLYDT NERLVRWNKK HETMSGYTSD
ELNGMHILKW FENDEKSIKA ILEGVQATME KGSGEAEADL QKKDGTTIPM YFTGSRLTID
DQPYLTGIGI DITERRRAAE EKEKLQAQLL QAQKIESVGR LAGGVAHDFN NMLNVILGHA
ALALSTLADD DLMRGHLEQI QKAADRSAGL TRQLLAFARK QTVAPKVLEL NATVASMLEM
LLRLIGEDID LAWHPGAHPM LIKMDPSQVD QILANLCVNA RDAIEGTGKI TIETGTADFD
EAYCAEHPDC IPGAYALLAI SDNGAGMDPE TISHLFEPFF TTKEMGKGSG LGLATIYGIV
RQNNGFINVY SEPGTGTTFK VYLLRHTDEG MAPAPVKKVF APLARGHETI LLVEDEALLL
DMTATMLRLQ GYTVLAASTP GEAMRLAREH AGDIHLLMTD VVMPEMNGRD LATRALSLRP
GIRLLFMSGY TANVIAHHGV LDDGVHFLQK PFSAKELAAR VREALDENDG GTPPAID
|
|---|
| |