Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_1241 |
Symbol | |
ID | 5694075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | - |
Start bp | 1480777 |
End bp | 1482504 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641263834 |
Product | hypothetical protein |
Protein accession | YP_001529124 |
Protein GI | 158521254 |
COG category | [N] Cell motility [S] Function unknown [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1944] Uncharacterized conserved protein [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | [TIGR00702] uncharacterized domain [TIGR03604] bacteriocin biosynthesis docking scaffold, SagD family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0044833 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCCTG TCATCTTAAA GGATGCATTT AAAACCGTTA CCACCGACCA GGACAAAATC CTTGCTCCGG AAGAGACAGT CCGGCGATTC CGGGAAAAGA CCCGGGAGCT GGGTCTTCGT ATCCTGAAGG AGACCAAACG CATCGATACC GGAAGGCTGG ATATTCCGGT CTATTTCAGT GTGTGCGGTC CGGACGCGAC CGCCATCACC CGGACCACCA AACAGATGGG CAAAGGCGCC ACGGTCCACC AGGCCGAGGC CAGCGCCGTG ATGGAGCTGG CCGAACGGTT CAGCTTTTTT TCATTTGCCG ACACCACTGA AAACTTTCAC ACCGGCACTT CCACCGACTT CGCCCCCCGT GCGATTCCCT TTGAACTGAT CGCCCGGTCG GTACACGATC AGTCCGACGA GCTGGCTGAG GCCCGTGTCC TGTTTGAATC ACTTTCCCTG CAATGGGTGG AGGGGTACAA CCTGACCCGG AACACGGACA CCATGATCCC CTTTGACTGG TTTTTTATGA TCAACGAATT CAACGGTCCA TCGGCCGGCA ACTGCGCGGA GGAGGCAATT CTCCAGGGCC TTTGCGAAGT GGTGGAACGC CATGTCTCCT CCCTGATCAG CCGGGAAAAA CGCCGGGTAC CGCATATCGA TCCGGCATCG GTCACCGATC CGATGGTGAT TGACATGCTG GGAAAATACA AAACCGCGGG CATTCATGTT TTTCTTTCCG ATTTCACCCT GGACATGGGC ATCCCCACCG TGGGGGTCCT GGCCTATGAT CCGGCCACCT TCCCCCGTAA AAGTGAAATT GTGTGGACGG CGGGAACAGC GGCCGATCCA CAGAAGGCCT TGAGCCGGGC ACTGACGGAG ACCGCCCAGC TGGCCGGAGA CTTTGAAACC GGTGCCAGCT ACGTGGCCAG TGGTCTGCCC AAGTTCAAAA ACATTGAAGA TGCCGATTTT ATCACCGGCC CCGGCCCCAC CCTTCCCATC ACCCAACTGC CCGACCTGTC GGATCGTAAC ATAAAGGTGG AAATCCAGCG GTGCGTGTCT GCCCTGAAGG AGAAGGGGAT GGAGGTGCTG CTGGTGGAAA CCACCCATCC GCGACTGGGT GTCCCTGCCT TTTACACCAT CGTGCCGGGG GCGCACTTCC GGGAACGGGC CGCGGGCACC AGCGTGGCCA TGTTCTGCGC TAAAATGGTG GCCGAAAGAA TGCCGCCGGA CCAGGCTATT GGCCGCCTGA ACGAAATGGA CCGTATCCTG CCTGGAAAAT ATTTCATTCA GTTTTATCTG GGCTATTGCC GGCTGGCCTC GGGCGACCCG GAATCCGCCA TCACCCATTT TACGCTGGCA CTGGACTTAA ACCCGACCGA CCAGGACCGG TCCAGCATCT ACTCTTACAT GGGTGTGGCC TTAAAAGAGA TGGAACGGTT TGACCAGGCC CTGGCGGTGC TTGAAAAGGG CGCGGACCTG GATGAAGACC GCACCGACAT TTACAACCTC ATGGGATTCT GCCATTTCAA ACGGCAGGAA CACGAAAAGG CCATTGACTG CTTCAAAAAG GTGATTTCCC TAAATCCCGG GTCGGCCATC GATTATGCCA ACATCGGCGT CAACTACCGG GCCCTGGGCA ACATGGAAAA GGCGGTCCAG TATTACATGA TGGCCCTTGA AATCGACCCG TCCATCGGGT TTGCCAGGGA ACACCTGGAG GAACTGGGAA AAGGGTAG
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Protein sequence | MSPVILKDAF KTVTTDQDKI LAPEETVRRF REKTRELGLR ILKETKRIDT GRLDIPVYFS VCGPDATAIT RTTKQMGKGA TVHQAEASAV MELAERFSFF SFADTTENFH TGTSTDFAPR AIPFELIARS VHDQSDELAE ARVLFESLSL QWVEGYNLTR NTDTMIPFDW FFMINEFNGP SAGNCAEEAI LQGLCEVVER HVSSLISREK RRVPHIDPAS VTDPMVIDML GKYKTAGIHV FLSDFTLDMG IPTVGVLAYD PATFPRKSEI VWTAGTAADP QKALSRALTE TAQLAGDFET GASYVASGLP KFKNIEDADF ITGPGPTLPI TQLPDLSDRN IKVEIQRCVS ALKEKGMEVL LVETTHPRLG VPAFYTIVPG AHFRERAAGT SVAMFCAKMV AERMPPDQAI GRLNEMDRIL PGKYFIQFYL GYCRLASGDP ESAITHFTLA LDLNPTDQDR SSIYSYMGVA LKEMERFDQA LAVLEKGADL DEDRTDIYNL MGFCHFKRQE HEKAIDCFKK VISLNPGSAI DYANIGVNYR ALGNMEKAVQ YYMMALEIDP SIGFAREHLE ELGKG
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