Gene Dole_1241 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_1241 
Symbol 
ID5694075 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp1480777 
End bp1482504 
Gene Length1728 bp 
Protein Length575 aa 
Translation table11 
GC content57% 
IMG OID641263834 
Producthypothetical protein 
Protein accessionYP_001529124 
Protein GI158521254 
COG category[N] Cell motility
[S] Function unknown
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1944] Uncharacterized conserved protein
[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID[TIGR00702] uncharacterized domain
[TIGR03604] bacteriocin biosynthesis docking scaffold, SagD family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0044833 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCCTG TCATCTTAAA GGATGCATTT AAAACCGTTA CCACCGACCA GGACAAAATC 
CTTGCTCCGG AAGAGACAGT CCGGCGATTC CGGGAAAAGA CCCGGGAGCT GGGTCTTCGT
ATCCTGAAGG AGACCAAACG CATCGATACC GGAAGGCTGG ATATTCCGGT CTATTTCAGT
GTGTGCGGTC CGGACGCGAC CGCCATCACC CGGACCACCA AACAGATGGG CAAAGGCGCC
ACGGTCCACC AGGCCGAGGC CAGCGCCGTG ATGGAGCTGG CCGAACGGTT CAGCTTTTTT
TCATTTGCCG ACACCACTGA AAACTTTCAC ACCGGCACTT CCACCGACTT CGCCCCCCGT
GCGATTCCCT TTGAACTGAT CGCCCGGTCG GTACACGATC AGTCCGACGA GCTGGCTGAG
GCCCGTGTCC TGTTTGAATC ACTTTCCCTG CAATGGGTGG AGGGGTACAA CCTGACCCGG
AACACGGACA CCATGATCCC CTTTGACTGG TTTTTTATGA TCAACGAATT CAACGGTCCA
TCGGCCGGCA ACTGCGCGGA GGAGGCAATT CTCCAGGGCC TTTGCGAAGT GGTGGAACGC
CATGTCTCCT CCCTGATCAG CCGGGAAAAA CGCCGGGTAC CGCATATCGA TCCGGCATCG
GTCACCGATC CGATGGTGAT TGACATGCTG GGAAAATACA AAACCGCGGG CATTCATGTT
TTTCTTTCCG ATTTCACCCT GGACATGGGC ATCCCCACCG TGGGGGTCCT GGCCTATGAT
CCGGCCACCT TCCCCCGTAA AAGTGAAATT GTGTGGACGG CGGGAACAGC GGCCGATCCA
CAGAAGGCCT TGAGCCGGGC ACTGACGGAG ACCGCCCAGC TGGCCGGAGA CTTTGAAACC
GGTGCCAGCT ACGTGGCCAG TGGTCTGCCC AAGTTCAAAA ACATTGAAGA TGCCGATTTT
ATCACCGGCC CCGGCCCCAC CCTTCCCATC ACCCAACTGC CCGACCTGTC GGATCGTAAC
ATAAAGGTGG AAATCCAGCG GTGCGTGTCT GCCCTGAAGG AGAAGGGGAT GGAGGTGCTG
CTGGTGGAAA CCACCCATCC GCGACTGGGT GTCCCTGCCT TTTACACCAT CGTGCCGGGG
GCGCACTTCC GGGAACGGGC CGCGGGCACC AGCGTGGCCA TGTTCTGCGC TAAAATGGTG
GCCGAAAGAA TGCCGCCGGA CCAGGCTATT GGCCGCCTGA ACGAAATGGA CCGTATCCTG
CCTGGAAAAT ATTTCATTCA GTTTTATCTG GGCTATTGCC GGCTGGCCTC GGGCGACCCG
GAATCCGCCA TCACCCATTT TACGCTGGCA CTGGACTTAA ACCCGACCGA CCAGGACCGG
TCCAGCATCT ACTCTTACAT GGGTGTGGCC TTAAAAGAGA TGGAACGGTT TGACCAGGCC
CTGGCGGTGC TTGAAAAGGG CGCGGACCTG GATGAAGACC GCACCGACAT TTACAACCTC
ATGGGATTCT GCCATTTCAA ACGGCAGGAA CACGAAAAGG CCATTGACTG CTTCAAAAAG
GTGATTTCCC TAAATCCCGG GTCGGCCATC GATTATGCCA ACATCGGCGT CAACTACCGG
GCCCTGGGCA ACATGGAAAA GGCGGTCCAG TATTACATGA TGGCCCTTGA AATCGACCCG
TCCATCGGGT TTGCCAGGGA ACACCTGGAG GAACTGGGAA AAGGGTAG
 
Protein sequence
MSPVILKDAF KTVTTDQDKI LAPEETVRRF REKTRELGLR ILKETKRIDT GRLDIPVYFS 
VCGPDATAIT RTTKQMGKGA TVHQAEASAV MELAERFSFF SFADTTENFH TGTSTDFAPR
AIPFELIARS VHDQSDELAE ARVLFESLSL QWVEGYNLTR NTDTMIPFDW FFMINEFNGP
SAGNCAEEAI LQGLCEVVER HVSSLISREK RRVPHIDPAS VTDPMVIDML GKYKTAGIHV
FLSDFTLDMG IPTVGVLAYD PATFPRKSEI VWTAGTAADP QKALSRALTE TAQLAGDFET
GASYVASGLP KFKNIEDADF ITGPGPTLPI TQLPDLSDRN IKVEIQRCVS ALKEKGMEVL
LVETTHPRLG VPAFYTIVPG AHFRERAAGT SVAMFCAKMV AERMPPDQAI GRLNEMDRIL
PGKYFIQFYL GYCRLASGDP ESAITHFTLA LDLNPTDQDR SSIYSYMGVA LKEMERFDQA
LAVLEKGADL DEDRTDIYNL MGFCHFKRQE HEKAIDCFKK VISLNPGSAI DYANIGVNYR
ALGNMEKAVQ YYMMALEIDP SIGFAREHLE ELGKG