| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1094 |
|---|
| Symbol | |
|---|
| ID | 5693928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 1298905 |
|---|
| End bp | 1300686 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641263688 |
|---|
| Product | TrkA domain-containing protein |
|---|
| Protein accession | YP_001528978 |
|---|
| Protein GI | 158521108 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0471] Di- and tricarboxylate transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00281936 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTTG ACCAAACCGT TGTGTTTGCC GTGCTGCTGG TGACCCTGAT CTTTTTTGTG
TGGGGCCGGT GGCGGTATGA CATTGTTTCC CTGGGTGCCC TGCTGGCGAT CTTTGCCGCC
GGGCTGGTGC CCGGAGACGA GGTGTTTGCC GGGTTCGGCC ATCCGGCGGT GATCACGGTG
GCGGCCGTGC TGATAATCAG CCGGGGCCTG CTCAACGCCG GAGTGGTGGA GAGCATCTCC
CGGCTGCTGG AAAAGGTGGG CAACCGGCCC ACCCTTCAGG TGGCGGCCCT TACCGGCATC
GTGGTGGTCT GCTCGGGCTT TATGAACAAC GTGGGGGCAC TGGCCCTGAT GATGCCCGTG
GCTGTCTGGA TGTCACGCAA AAGCGGGCGC TCCCCTTCCC TGCTGCTCAT GCCCCTGGCC
TTCGGCTCCC TGATCGGGGG CCTGATCACA CTGATCGGTA CGCCGCCCAA CATCATTCTG
GCCACCTTTC GTACCGAGAC AGGCAGCCCC CCTTTTGGTA TGTTTGACTT TGCCCCCGTA
GGCCTGGGTG TGGCAGCGGC GGGCCTGATC TTTATTTCGC TGGTGGGCTG GCGGCTTACG
CCCCGGCGGC AGAGCGGCAC CGAGGCGGAT GAACTGTTTG AAATTGACGA CTACATCAGC
GAAGTGGTGG TGCCGGAGAC CTCAAAAATG GTGGGCCAGA CCCTCTACCA TCTCTCCCTG
GCCATGGAAA AGGACAGGCA GGTTACAATG GTGGCCCTGG TGCGCGGAGA GCGCCATATT
CCGGCACCGT CCTGGTACGA GGTGCTGTCC GCCGGAGACA TCCTGGTGGT GCGGGCCGAT
GCAGAGGAAC TGCAGTTTCT CATCGATGAG CTGGGCATGG AGCTGGCCGC CAACCGGGAG
GCGGACAAGG CGGCCCTGGA GTCCGAGGAT ATTCGCATCA TGGAAGTCAT TGTTTCCCCG
GGATCGGCCA TGATCGGCCA TACCGCCATG AGCATGCGGC TGCGGCGCAA TCATGGCGTG
AACCTGCTGG CCGTGGCCCG CCAGGGCCAG CGGCTCAAGA CCCGGCTGGG CCAGACCCGG
TTTGCCGCCG GCGACATCCT GCTGCTGCAG GGAGGGCAGG AGGCGATCAG CACCTTTCTT
TCGGCCATGA GCTGCCTGCC CCTGGCCCAG CGCGGTTTTC ATCTTTCCCG GCCCCGGCAG
GTGGTGATGG CCGTGACGAT TTTCGGCGCG GCCATGGCAG CCGCGGCCCT GGACCTGGCG
CCGGTGCAGG TGGCCTTTGC CGGGGCCGCG CTGATCATGG TGGTGACCGG CCTGATTCCA
TTAAAGGAGA TTTATGAAAG CGTGGACTGG CCCATCATCA TTCTGCTGGG GGCGCTGTTT
CCCCTGGGAA CGGCCCTGGA GACCACGGGC GGGGCCCAGC TGATCGCCGA CAGGCTGGTG
CTGCTCTCCG GCCGGTTTCC GCCCTGGGCC GTTCTGGCCG TATTGATGGC CGGCACCATG
CTGCTTTCCA ACGTGATCAA CAACGCCGCG GCCGCCGTGC TGATGGCCCC CATCGCCCTG
AGCCTGGCCC ATGGCATGGG CGTGTCCGCC GATCCGCTGC TCATGGCCGT GGCCGTGGGC
GCCTCCTGCG CTTTTCTGAC GCCGGTGGGC CACCAGTCCA ACGCCCTGGT GATGGCGCCC
GGCGGCTACC GGTTCGGCGA TTACTGGCGC ATGGGCCTGC CCCTCTCCGT TATCGTGATG
GCCGTGGCCG TGCCCCTGAT CGTGATGGTG TGGTCTTTTT AA
|
|---|
| Protein sequence | MTLDQTVVFA VLLVTLIFFV WGRWRYDIVS LGALLAIFAA GLVPGDEVFA GFGHPAVITV
AAVLIISRGL LNAGVVESIS RLLEKVGNRP TLQVAALTGI VVVCSGFMNN VGALALMMPV
AVWMSRKSGR SPSLLLMPLA FGSLIGGLIT LIGTPPNIIL ATFRTETGSP PFGMFDFAPV
GLGVAAAGLI FISLVGWRLT PRRQSGTEAD ELFEIDDYIS EVVVPETSKM VGQTLYHLSL
AMEKDRQVTM VALVRGERHI PAPSWYEVLS AGDILVVRAD AEELQFLIDE LGMELAANRE
ADKAALESED IRIMEVIVSP GSAMIGHTAM SMRLRRNHGV NLLAVARQGQ RLKTRLGQTR
FAAGDILLLQ GGQEAISTFL SAMSCLPLAQ RGFHLSRPRQ VVMAVTIFGA AMAAAALDLA
PVQVAFAGAA LIMVVTGLIP LKEIYESVDW PIIILLGALF PLGTALETTG GAQLIADRLV
LLSGRFPPWA VLAVLMAGTM LLSNVINNAA AAVLMAPIAL SLAHGMGVSA DPLLMAVAVG
ASCAFLTPVG HQSNALVMAP GGYRFGDYWR MGLPLSVIVM AVAVPLIVMV WSF
|
|---|
| |