Gene Dole_1090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_1090 
Symbol 
ID5693924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp1290213 
End bp1292753 
Gene Length2541 bp 
Protein Length846 aa 
Translation table11 
GC content56% 
IMG OID641263684 
Productresponse regulator receiver protein 
Protein accessionYP_001528974 
Protein GI158521104 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[K] Transcription
[T] Signal transduction mechanisms
[N] Cell motility 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.874134 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGAAA TTAGCGCCCA GCCCCGGATC GTCTATATTG ATGACGACAG AAACCAGTTG 
GCGCTGGTAG AACGTTTTTT GTCGGGCCCA TTCGAAGTGA TCACCGCGGA AAACGGGGAA
GATGGCTTGC GGATCATCAG CGAGACGCCG CCCGACCTGG TCCTGCTGGA CATCAACATG
CCGAAAATGG ACGGGTATGA AGTGTGCACC CGATTACAGG CGACCCCAAA AACCTCTTTC
ATTCCGGTGG TTTTTCTCAC CGCCATGGAA GAAGAGAAAG ACCGTGCCCG TGCGTTTGCG
GCAGGCGCCT CTGATTTTCT GGTCAAACCC GTCAAAAAGG ATGCGTTGCT CGAGAAAGTG
CGCGCGCAAC TGGCCACGGG TGCTGCATGG AAAGACCTTC AGGCAGACAA CCGGCAATGG
CATAAAAAAA TAGAATCAGC GGATTTTGCC GGTTTCAAGG AACATGTTGC CGGCCAACTG
AACCTGGCAC CGGATAAAAA AGAGCGGCTT TTCGAAACAA CCGCAGCGGA TATCTATACC
GTCTTTGCTG AGATGGGGCT TGTCGAAAGT ACCCTGAGCC GGCTCATGTC ACAGTATATG
GGCCTGCCTT ACACCACACG CATCTCCCCC GAGACGATCC GGCTGGGCGC CATACCAACG
GCCTTCTGCA AAGCCAATCA TGTGCTGCCG GTTATGACCG AATCCGGGGA AAAGGGGTTT
ATCCTCAGCA ACCCCTTTAA TCTGGACCTG GTCGATATGC TGAAAAAAAA TTTCGCCCTT
GAGAAGACCG CGGCTATCAG TATTGCCGAA CCGAGCCGGA TCGATCTTTT CTTTATTGAG
GCCCCTTCTC AACAGAAATC ATCGGCTGTT GGCGGCCCAC AAACACCATC ACCGGCCACA
GCTCCGAAAA TAACGGTTCG GAACGAGGCC GACACCGACC ATCCGATCGT GCAGATCACC
GATACCATAC TGAACGCGGC CGTGGCGGAG AGAGCCAGCG ACATTCATAT CGAGCCCAAA
GAGACGGAAA CGACCGTACG GTTCCGCGTC GACGGGGACC TGCGGCATGC ATTCACGCTG
AAGAAGGCCA CCGGCATGAT GATCATTTCC AGGCTGAAAG CCCAGAGCGG AATCGATATC
GCGGAAAAAC GAAAACCCCA GGACGGCGGC TTTGTTGCCA ACCTGGGCGA CCGGGTATTT
AACTTCCGGC TCTCCACCAC CTCCACGCCC AACGGGGAAA GCCTTGTCAT GCGGTTGCTC
GAACCCTATG GCGCGGCCAA CAGCCTTTCG GAACTCGGTA TGATGGACGG GCAGGTTGCG
GCCATGGTCG CGGCCGCCAA TCGCTCCAGC GGAACAATTC TGATCGTGGG ATCGACCGGC
TCCGGGAAGA CGACCACCAT TTACAGCCTT CTTCATGCCA TCGACCACAA GAAGCGCAGC
ATCATGTCCG TGGAAGATCC GGTCGAGTAT CGCATTCCCT TTCTCAACCA GCAGCAGGTG
AACGAAAAGG CCGGGGTCAC CTTCGATTCC CTGCTCAAGG CGGCGGTCCG GCAGGATCCG
GATGTCCTGT TCATGGGAGA GATTCGAGAC GGGTTTTCCG CCAAAATGGC CGTCGACTTT
GCCAGCACCG GCCACCTGAC CATCACCACG CTGCACACAT CCAACGCCAC CACCGCCCTG
TTCCGCCTTC ACCGTCTGGG TATCGACCGG GGCACCATGG CCGATACCAT TATCGTGATC
GTGGCGCAAA AACTATTGAA AAAACTCTGT CCCCACTGCA AGCAGACGGT TCCGATTTCG
CCCCAGGAGA GAGAGATGCT GGCGGCCTTC ACGGACGACG TTCCCTCTGT TGTAGCTCGG
TCTGTGGGCT GTCCCGAGTG CCGCAGCACC GGCTATCTCG GCAGGGAAGG CGTTTACGAG
GTACTGGAAT TCGATACCCA GATCGCCGAA ATGGTCCGTT CCAACGCGCC CATCGCCGAA
ATCCGTTCCT TTGCGAAACG CCGGGGGGAC CTTCTGATTG ATACGCACGC CATCACCAAG
GTCAAAGAGC TTCTTTTCAC CCCCAAGGAT ATTTTTGAAA AAGTGCTGGC GGAAGAAACG
CCCGTCCGTG AACGGCAGAA GCCGCGCAAA CCCGAACCGG CAACCGCTGA TGCCGGTCCC
CCGGCTTCCG CCGCATCCGT TCTGCTGGTT GAAGACGACG CGGATACCCG CATGCTCATC
ACCCGCTTTC TGGAAACTGA CGGTTACACG GTCACCGCCT GCGCCGACGG CATAGACGCA
TTGCTGTGTC TCGGAAAACA GTCCTTTGAC CTGATTCTCT CTGATATCGA CATGCCCAAT
CTCGACGGGT TCAAGCTGCT CGAAATGATC AACCAGAAGG GCGTCAGCGT GCCGGTCATC
TTTCTGACCT CCAGAGCCGG CCATGAGGAC GAAACCAGAG GGCTGGAGCT GGGGGCCGTC
GACTATATAA AAAAACCGGT GCAAAAAGAC CTGCTTCGGT TAAGAGTCAA AAAAACGATC
CAGGGAAGGG TGTCGCCATG A
 
Protein sequence
MNEISAQPRI VYIDDDRNQL ALVERFLSGP FEVITAENGE DGLRIISETP PDLVLLDINM 
PKMDGYEVCT RLQATPKTSF IPVVFLTAME EEKDRARAFA AGASDFLVKP VKKDALLEKV
RAQLATGAAW KDLQADNRQW HKKIESADFA GFKEHVAGQL NLAPDKKERL FETTAADIYT
VFAEMGLVES TLSRLMSQYM GLPYTTRISP ETIRLGAIPT AFCKANHVLP VMTESGEKGF
ILSNPFNLDL VDMLKKNFAL EKTAAISIAE PSRIDLFFIE APSQQKSSAV GGPQTPSPAT
APKITVRNEA DTDHPIVQIT DTILNAAVAE RASDIHIEPK ETETTVRFRV DGDLRHAFTL
KKATGMMIIS RLKAQSGIDI AEKRKPQDGG FVANLGDRVF NFRLSTTSTP NGESLVMRLL
EPYGAANSLS ELGMMDGQVA AMVAAANRSS GTILIVGSTG SGKTTTIYSL LHAIDHKKRS
IMSVEDPVEY RIPFLNQQQV NEKAGVTFDS LLKAAVRQDP DVLFMGEIRD GFSAKMAVDF
ASTGHLTITT LHTSNATTAL FRLHRLGIDR GTMADTIIVI VAQKLLKKLC PHCKQTVPIS
PQEREMLAAF TDDVPSVVAR SVGCPECRST GYLGREGVYE VLEFDTQIAE MVRSNAPIAE
IRSFAKRRGD LLIDTHAITK VKELLFTPKD IFEKVLAEET PVRERQKPRK PEPATADAGP
PASAASVLLV EDDADTRMLI TRFLETDGYT VTACADGIDA LLCLGKQSFD LILSDIDMPN
LDGFKLLEMI NQKGVSVPVI FLTSRAGHED ETRGLELGAV DYIKKPVQKD LLRLRVKKTI
QGRVSP