| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1030 |
|---|
| Symbol | |
|---|
| ID | 5693865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1215813 |
|---|
| End bp | 1217783 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641263627 |
|---|
| Product | peptidase U32 |
|---|
| Protein accession | YP_001528917 |
|---|
| Protein GI | 158521047 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0826] Collagenase and related proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGACA CAAAAAACCA TAAACCCCAG ATTCTTGCCC CGGCCGGGGG AAAGGCATCG
TTTCTGGCGG CCCTGGCTGC CGGCGCCGAC GTGATCTATT GCGGCCTGAA AAGTTTTTCC
GCCCGCATGG CGGCAGAAAA CTTTGCGCCC GGTGAACTTC GCGCGCTGAC GGAGCTGGCC
CATAAAAAAG GGGTGAAGGT CTTTGTGGCG CTTAATACCC TGGTCCGTCC GGGGGAGATT
CCCCAGGTCC GGCAGCTGGT CCACATCCTT GGCAGAGAGG TGGGCGCCGA CGCGCTGATC
GTTCAGGATT TGAGTGTTGT GGAACTGGCG AAACAGGCCG GTTTTAAAGG AGAACTGCAC
CTTTCCACCC TGGGGGCGGT CACCTTTTCA AAGGCGCTGG GCCTGATTTC CAGTGCCCTG
GGTGTCAGCC GGGTGGTGCT GCCCAGGGAG TTTCACATCG ATGAGATCAA GCAGATGGCC
CAGTCCTGTC CCCCGGGCAT GAGCCTGGAG GTGTTCGTTC ACGGGGCCCT GTGCTACGGG
GTGTCGGGCC GGTGCTACTG GAGCAGTTAC ATGGGCGGCA AAAGCGGGCT GCGGGGTCGG
TGCGTGCAGC CCTGCCGCCG GACCTACACC CAGGGCCGGT CCGAGGGCCG CTGGTTTTCC
TGTCTTGATT TTTCCGTGGA CGTGCTCACC AAGACCCTGC TGCCCCTGCC GCAGATCACC
GCCTGGAAGA TAGAGGGCCG TAAAAAAGGG CCCCACTATG TTTACTACAC CACCACTGCC
TATAAAATGC TGCGGGACCA CGGCAACGAC CCGAAGATTA AAAAGGATGC CATGGGCTAT
CTTGAACAGG CCCTGGGCAG AAAAACCACC CACTACAACT TTCTGCCCCA GCGGCCCTAT
CCGCCGTCAG GCCAGGAGGA GCAGACCGGG TCCGGGCTTC TGGCCGGACG GGTGAAGAGC
GACGGCGGCA GGCCGGCCCT CTCCCCCCGC ATGGGGTTGA TCAAGGGGGA CCTGCTGCGT
ATTGGTTACG AGGACAAGCC CGGCCACAGC CTGCTTCGGG TGCCGGCCGC CGTACCGGCC
AGGGGCCGGC TGGTGTTAAA GGTCCGTGGC GCTGTGCCCG CGGCCGGAAC ACCGGTTTTT
CTCATTGACC GCATGGAAGA CGCCCTGGAA ACCATGATCG GGGATCTGGC GGCTGAACTG
ACTGACGCCC CCTGCCGGGA AACAACCTCG GCCGCACCGG ACCGGGCGGC CCGGCAGCGA
CGGCCGGCAT CCAGGTCGCC GGAAGAGATG ACGGTTTACC GGTCCCTGCC AAGGGGAAGG
CAGGCCCACA GTGTGGGCTT CTGGCTCTCT CTTGAGGGAG CCAGAGGTGC CGCCAGGCTG
AATGCCCAAC AGTGGCTCTG GCTGCCGCCG GTGGTGTGGC AGGAGGACGC AGACCGGTGG
CAGGCGCTGG TGAACCGTAT GGTCAAACAG GGTGCCCGGC GGTTCGTGCT GAACGCGCCC
TGGCAGATAT CCCTGTTTGA ACGGACAAGA AATCTGGACC TGTGGGCCGG GCCGTTCTGC
AACCAGGCAA ACGGGGTCTC GATTCAGGTA CTGGCAGGGA TGGGTTTTTC CGGTGTTATC
GTGAGCCCCG AGCTGGGGAA AGAAGATTAC GCGGTCATTC CGGGCCAGAG CCCGGTCCCC
TTGGGAGTGG TTGTTTCGGG CAGCCTGCCC CTGTGCGTGG CCCGTACCCT GCCGGGACCG
GTTCGGGAGA AAAAACTGTT TTCAAGCCCC AGGAAGGAAA ATGCCTGGGC CGAGAAGCAC
AGCGGCCTTG TGTGGTTGTA TCCCGACTGG ATGGTGGATC TGCGGCCCCG GCAGAAAATC
CTGGAACAGT ACGGGTATGC GCTCTTTATT CATCTCCACC ACAGCCCGCC GCCGGGCGTG
AAAATCAGGC AGCGGCCGGG GATGTGGAAC TGGGATGTCG GCCTGCCGTG A
|
|---|
| Protein sequence | MIDTKNHKPQ ILAPAGGKAS FLAALAAGAD VIYCGLKSFS ARMAAENFAP GELRALTELA
HKKGVKVFVA LNTLVRPGEI PQVRQLVHIL GREVGADALI VQDLSVVELA KQAGFKGELH
LSTLGAVTFS KALGLISSAL GVSRVVLPRE FHIDEIKQMA QSCPPGMSLE VFVHGALCYG
VSGRCYWSSY MGGKSGLRGR CVQPCRRTYT QGRSEGRWFS CLDFSVDVLT KTLLPLPQIT
AWKIEGRKKG PHYVYYTTTA YKMLRDHGND PKIKKDAMGY LEQALGRKTT HYNFLPQRPY
PPSGQEEQTG SGLLAGRVKS DGGRPALSPR MGLIKGDLLR IGYEDKPGHS LLRVPAAVPA
RGRLVLKVRG AVPAAGTPVF LIDRMEDALE TMIGDLAAEL TDAPCRETTS AAPDRAARQR
RPASRSPEEM TVYRSLPRGR QAHSVGFWLS LEGARGAARL NAQQWLWLPP VVWQEDADRW
QALVNRMVKQ GARRFVLNAP WQISLFERTR NLDLWAGPFC NQANGVSIQV LAGMGFSGVI
VSPELGKEDY AVIPGQSPVP LGVVVSGSLP LCVARTLPGP VREKKLFSSP RKENAWAEKH
SGLVWLYPDW MVDLRPRQKI LEQYGYALFI HLHHSPPPGV KIRQRPGMWN WDVGLP
|
|---|
| |