| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0994 |
|---|
| Symbol | |
|---|
| ID | 5693829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1166178 |
|---|
| End bp | 1167695 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641263591 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001528881 |
|---|
| Protein GI | 158521011 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0279763 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAG AATACAAAGA TATTGCCGGT GATATTGAAG AGACCGTGGA TGTGTGTGTC
ATCGGTACCG GCGCCGGCGG TGCCGTGGTG GCGGCAGATC TCGCGGAAAA GGGATTGCGG
GTGGCGGTCC TGGAAGAGGG AAGCCGCTTT ACCATTAAAA ACTTCAACCA GGATCCTGCC
GACATGATGG CCATGATGTA CCGGGACGAC GGGTTTACCG TGACCCTGGG ACTGCCCCCG
GTCTCCCTTC CCCTGGGAAA GGCCGTGGGC GGCACCACCA TCATCAACTC CGCCACCTGC
TTTCGTACCC CGAAGCCGGT GGTGGAAAAG TGGGCCGACC GGTACGACTG CGCCGGGCTC
TCCTATGACA CGCTGGCCCC TTATTTTGAT GGGGTTGAAA AAGCGATCAG CGTGGTGGAA
CTCTCCGAGG ATGTGCTGGG CAAAAACTAC CAGATCGTCA GGCGGGGCGC AAAAAAGCTG
GGCATCGAAA CCAAACCCTT GAAACACAAT GTCAAGGGGT GCGAAGGCGC GGGCGTGTGC
CAGTGGGGAT GTGTGAAACA GGCCAAACAG TCCACTGACC TGGCCTATAT TCCCCGGGCA
GACAAAGCCG GCGCCCGGAT TTACGCCAAC TGCCGGGCAA AACGGATCGT TACCGAAGCC
GGCCGGGTGG TGGGGGTAAA GGGTCGTGTG GTCAATCCCG CCAACGGCAG GGAGACCGGC
TCGTTTTTTA TTCGGGCCCG CATCGTGTGC GCGGCCATGG GGTCTATGAT CACCCCGGCA
TTTCTGCTGA AAAACCGGCT GGCCAACGTG TCCGGGCAGG TGGGCAGAAA CCTGACCATC
CATCCCTGCG GGCGGGTGGT GGCCGAGATG GACGAGGTGG TCAATGGCCA CCACGGCGTC
TCCCAGGGCG GTTTCATTGA CGCCTTTGCC GATGAGGGGA TCATGCTGGA AGGCATTTTC
ATCCCGCCGG GGGTGATGGG ACTGGCCCTG CCCGGCATGG GGCAGAAACA TAAGGCCCTG
GCCAGGGCAT ACAATAATAT TGCCGCTTTT GGCGTCATGG TCAGCGACAC CACCCGGGGC
CGCATTCTGC CGGGCCTGCC CGGTTACGCC TATACCGCGT GGTACTCCCT GAACCAGGCC
GATGCCGAAA CCCTGCGCAA AGGCGTGGGC ATCCTGGCCG ACATCTTTTT TGCCGCCGGG
GCCCGGCGGG TGTTTACCGG CTGTTTCAAG CTGCCGGAGA TTACCGGCAA ACAGGAGCTG
GAACGGTTCA AAACCATGCC CATCCGGCCA TGGCATTTCG AGCTCATGGC CTTTCATCCC
CTGGGCACCT GCAGGATGGG CAACAACCCG CGATCGGCCG TGGTAAACCT CAATCTCGAA
AGTCATGACG TCAAGGGCCT CTTTATCACC GACGGCAGCG TTTTTCCCTC CTCCCTGGGG
GTCAACCCCC AGGTGACCAT CATGGCGTTT GCCGCCCGGG CCGCTGACTA TATCGCCGCC
CATGCCGGAC GGTACTGA
|
|---|
| Protein sequence | MIKEYKDIAG DIEETVDVCV IGTGAGGAVV AADLAEKGLR VAVLEEGSRF TIKNFNQDPA
DMMAMMYRDD GFTVTLGLPP VSLPLGKAVG GTTIINSATC FRTPKPVVEK WADRYDCAGL
SYDTLAPYFD GVEKAISVVE LSEDVLGKNY QIVRRGAKKL GIETKPLKHN VKGCEGAGVC
QWGCVKQAKQ STDLAYIPRA DKAGARIYAN CRAKRIVTEA GRVVGVKGRV VNPANGRETG
SFFIRARIVC AAMGSMITPA FLLKNRLANV SGQVGRNLTI HPCGRVVAEM DEVVNGHHGV
SQGGFIDAFA DEGIMLEGIF IPPGVMGLAL PGMGQKHKAL ARAYNNIAAF GVMVSDTTRG
RILPGLPGYA YTAWYSLNQA DAETLRKGVG ILADIFFAAG ARRVFTGCFK LPEITGKQEL
ERFKTMPIRP WHFELMAFHP LGTCRMGNNP RSAVVNLNLE SHDVKGLFIT DGSVFPSSLG
VNPQVTIMAF AARAADYIAA HAGRY
|
|---|
| |