| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0702 |
|---|
| Symbol | |
|---|
| ID | 5693537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 829582 |
|---|
| End bp | 833688 |
|---|
| Gene Length | 4107 bp |
|---|
| Protein Length | 1368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641263299 |
|---|
| Product | DNA-directed RNA polymerase, beta subunit |
|---|
| Protein accession | YP_001528589 |
|---|
| Protein GI | 158520719 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGCG AATCTATGTT GAACAGGCGC ATTAGAAAGC AATTCGGCAA GCTGGACAAG
ATCGTGGAAA TTCCCGATCT GATCGGTATG CAGAAAGAGT CCTACGGACG ATTCCTGCAG
CAGGGGGTTC CGCCGGAAAA GCGTGAAAAG ATCGGGTTGC AGGCGATCTT TCAGTCGGTA
TTTCCCATCA AGGATTTTAC CAAAAGCGCC TCCCTCGAAT TTGTCTCCTA CTCCTTCGGC
GGCGTTAAAC ATTCGGTGGC TGAATGCATT CAGCGGGGCA TGACCTACGA GATTCCCGTG
CGCATACGGG TCCGGCTGGT GGTCTATGAC ATGGATGAGA CATCGGGGAC ATCCAGCATT
CGGGACATCA AGGAACAGGA GATCTATTTC GGCGCCATTC CGCTGATGAC GGACAACGGC
ACCTTTATCA TCAACGGTAC CGAGCGGGTG GTGGTGAGCC AGCTGCACCG GTCGTCGGGC
ATTTTCTTTG ATCACGACCA GGGAAAGACC CACTCTTCCG GCAAGGTGGT CTACAGTTCC
CGCATCATTC CGGTGCGGGG GTCCTGGATC GATATCGAGA TCGACCCCAA GGACATCGTC
CACATGCGCA TCGACCGGCG GCGAAAGTTC CCGGGCACCA TCCTGTTCAA GGCCCTGGGC
TACACGGTAA AGGACATTCT TGATTATTTT TACACCAAGG AGCGCGTTTT TGTCCGCAAG
AAGAAGGTGT TCAAAGCCTT CAGTGAAGAT TCGCTGCGCG GCCAGCGGGC CACGGTCCGT
ATCAAGCATC CCGAAACCGG CGACCTGATC GTGGACAAGG GCCGGATCTT CAACAAGACC
GTGTTGAAAA ACATGAAGTC CGCGGGCATT GACATGGTGC CCATTCGCCC TGAAGACGTG
GTGGGAGCCG TTCTGGCCGC GCCATTGGCC GATTCCTCTA CCGGCGAAAT GCTGGCCGAT
GCCGGTGATT TTATCAGCGA AGAGGTGTTT GAGCGCATCG GCGAGCTGGG TATTGAGGAA
CTCCAGATTC TGTTTATCGA CGGCGCCGGC AGCACCGATT CCATTGTCAA AACCCTGCTG
CTGGACAAGG TGAACACCAA GGAAGAGGCC CTGATCGATA TCTACCGGCG TATTCGACCG
GGCAACCCGG CCACGCCGGA AGTGGCCCAG GATTTTATTG ATCATCTTTT TTTCAAGCCT
GACTACTACG ATCTTTCAGC CGTGGGCCGG CTGAAACTCA ACCACCGGCT GGGCGCCAAC
GCGCCGGTGA GCCTGCGGAC CCTGCGGCGG GAAGACCTGC TGCTGGCCGT AAAAACCCTG
ATTCACCTGA AAAACACCCA GGGGCCGGTG GACGACATCG ACCATCTGGG CAACCGCCGG
GTGCGGGCCG TGGGCGAGCT GCTGGAAAAC CAGTACCGCA TCGGCCTGGT GCGCATGGAG
CGGGCCATCA AGGAGCGCAT GAGCCTTCAG GAAGTGGACG CGCTCATGCC CCACGACCTG
ATCAATCCCA AGCCGGTCTC CGCGGTGGTG CGGGAATTCT TCGGTACCAG CCAGCTCTCC
CAGTTCATGG ACCAGACCAA CCCGTTGTCC GAGACCACCC ACAAGCGGCG GCTCTCCGCC
CTGGGCCCCG GCGGCCTGAC CCGGGAACGG GCCGGATTCG AGGTCCGGGA CGTGCATCCC
TCCCATTACG GCCGCATCTG TCCCATTGAA ACGCCGGAAG GCCCCAACAT CGGCCTGATC
GTTTCGCTGA GCACCTATGC GCGTGTCAAC GGCTATGGTT TTATCGAGAC GCCGTACCGC
GTGGTCAAAG ACACCAAAGT TTCCAAAGAG ATTAAAATGC TGCCCGCCTT TGAAGAAGGG
GAGCATCCCA TTGCCCAGGC CAACGCCCCC ATCGGCAAGG ACGGCCGGTA TGTCAACCCG
GTGGTCATTG CCCGGGTGGC CGGCGAGTTC AGCATGATCA AGGCCAGTGA CGTGGAGCTC
ATGGATGTGT CGCCCAACCA GCTGGTCAGC GTCTCGGCCT CCCTGATCCC CTTTCTTGAA
AACGACGACG CCAACCGGGC CCTGATGGGG TCCAACATGC AGCGACAGTC CGTGCCCCTG
GCCAGGACCA GCGCGCCCCT GGTGGGCACG GGTGTGGAAA AGGTGGTGGC CCGGGATTCG
GGTGTGGCCG TGGTGGCCCG CCGGCCCGGC GAGGTCGTTT ACGTGGACTC CGGCCGCATC
GTGGTCCGTC ACGACACCGA CGACAAGGAC CCGGAAGCCA AACCGGTAAC CGTCTACAAC
CTGTCCAAGT TCATTCGCTC CAACCAGAAC ACCTGTTTCA ACCACCGGCC CATCGTCAAG
AAGGGGCAGC GGGTGGCGCC CGGCGACGTG CTGGCTGACG GCCCGGCCAC GGAAAAGGGC
GAGCTGGCCC TGGGCAAGAA CGTGACCGTG GCCTTCATGC CATGGGGCGG GTACAACTTT
GAAGATTCCA TCCTGGTGGG GGAAACCCTG GTGCGGGACG GCGTGTTTAC CTCGATTCAC
ATTGAAGAGT TCGAGGTGGT GGCCCGGGAC ACCAAGCTGG GCAAGGAAGA GATCACCTGC
GACATTCCCA ATGTGGGCGA AGAGAGCCTG GTGGACCTGG ATGAGAGCGG CATCGTCCGC
CTGGGCGCCG AGGTCAAGCC CGGCGATGTT CTGGTGGGCA AAATAACGCC CAAGGGCGAG
ACGCAGCTCT CCCCGGAAGA GAAACTGCTG CGCGCCATCT TCGGCGAAAA GGGCGGCAAT
GTGAAAGACA CCTCCCTTCG GGTGCCCCCC GGCGTCAGCG GCACGGTCAT CGATGCCAAG
GTCTTCACCC GTCGGGGCGT GGAAAAGGAC ACCCGCACCC GCATGATCGA GGAAGAAGAG
ATCCGTGTGC TGGAGAAGAA CCGGGACGAC GAGATTGCGG TCATCGAAGA GGTGACCCGG
GAACGGCTCA AGGCCCTGCT GACGGGACAG AAGTGTGATA CGCCGGTCAA GAAGGGCAAA
AAGACGATTC TTGCCAAGGG CGACAAGATC ACGGCCGCCC TGTTTGACGA GGTCCCCACC
TCCCAGTTTG AAAAGCTCGC CGTGACCTCC GACAGTGTCA CGGAGCAGGC CCACCGGGTA
TTTGAGTGGT ATCGGACCCA GGTTGATGCC TGCCGGGAAG AGTTCGAGGC CAGGATCAGC
CGCTACGGTG CCGGCGAGGA GCTGCCCCCC GGCGTGATCA AGATGGTCAA GGTGTACGTG
GCCATGAAAC GGGTGCTCTC CACAGGTGAC AAGATGGCCG GACGCCACGG CAATAAGGGC
GTGGTGTCGC GTATTCTGCC CCAGGAAGAC CTGCCCTACT TTGAAGACGG AACCACGGTG
GACATGGTGT TAAACCCTCT GGGTGTGCCG TCCCGTATGA ACGTTGGACA GATTCTGGAG
ATTCATCTGG GCCGGGCGGC CAGGGTCCTT GGCGATCAGA TCAGCACGAT GCTGGAAGAA
AAGAAATACA AGGACTTAAA GAAAAAGCTG TCCGCCGTTT TCAATAAGGA GATACCGGCC
GCCGAGATCG AGGCCATGAG TTCGGCCCGT CTCTGCGAGT TCGCGTCTGA ATACAAAGAC
GGTGTTCACA TGGAGACTCC GGTTTTTGAC GGTGCCAAGG AGGCGGAGAT CAAGGCCCTG
CTCAAGGAGG GCGGCGCAGA CGAGACCGGA CAGGCGATCC TTTACGACGG CCGTACCGGC
CAGCCTTTTG ACGAGCGGAT CACCGTGGGC ACCATGTACA TGCTCAAGCT CCACCATCTG
GTGGACGACA AGCTGCACGC CCGGTCTATC GGCCCCTATT CACTGGTCAC CCAGCAGCCC
CTGGGCGGCA AGGCCCAGTT CGGCGGCCAG CGTCTGGGCG AAATGGAAGT GTGGGCCATG
GAGGCCTATG GCGCGGCGTA CGCGCTGCAG GAGTTCCTTA CGGTCAAGTC CGACGACATC
GCCGGCCGGA CCCGCATGTA CGAGAAGATC GTCAAGGGCC AGAACGTCCT GGACCCGGGG
ATTCCCGAGT CTTTCAAGGT TCTGACCAAG GAGATGAAGG CGCTTGGGCT GGATGTAACC
CTTATTGAAC AGCAAGATAA GGAGTAA
|
|---|
| Protein sequence | MSGESMLNRR IRKQFGKLDK IVEIPDLIGM QKESYGRFLQ QGVPPEKREK IGLQAIFQSV
FPIKDFTKSA SLEFVSYSFG GVKHSVAECI QRGMTYEIPV RIRVRLVVYD MDETSGTSSI
RDIKEQEIYF GAIPLMTDNG TFIINGTERV VVSQLHRSSG IFFDHDQGKT HSSGKVVYSS
RIIPVRGSWI DIEIDPKDIV HMRIDRRRKF PGTILFKALG YTVKDILDYF YTKERVFVRK
KKVFKAFSED SLRGQRATVR IKHPETGDLI VDKGRIFNKT VLKNMKSAGI DMVPIRPEDV
VGAVLAAPLA DSSTGEMLAD AGDFISEEVF ERIGELGIEE LQILFIDGAG STDSIVKTLL
LDKVNTKEEA LIDIYRRIRP GNPATPEVAQ DFIDHLFFKP DYYDLSAVGR LKLNHRLGAN
APVSLRTLRR EDLLLAVKTL IHLKNTQGPV DDIDHLGNRR VRAVGELLEN QYRIGLVRME
RAIKERMSLQ EVDALMPHDL INPKPVSAVV REFFGTSQLS QFMDQTNPLS ETTHKRRLSA
LGPGGLTRER AGFEVRDVHP SHYGRICPIE TPEGPNIGLI VSLSTYARVN GYGFIETPYR
VVKDTKVSKE IKMLPAFEEG EHPIAQANAP IGKDGRYVNP VVIARVAGEF SMIKASDVEL
MDVSPNQLVS VSASLIPFLE NDDANRALMG SNMQRQSVPL ARTSAPLVGT GVEKVVARDS
GVAVVARRPG EVVYVDSGRI VVRHDTDDKD PEAKPVTVYN LSKFIRSNQN TCFNHRPIVK
KGQRVAPGDV LADGPATEKG ELALGKNVTV AFMPWGGYNF EDSILVGETL VRDGVFTSIH
IEEFEVVARD TKLGKEEITC DIPNVGEESL VDLDESGIVR LGAEVKPGDV LVGKITPKGE
TQLSPEEKLL RAIFGEKGGN VKDTSLRVPP GVSGTVIDAK VFTRRGVEKD TRTRMIEEEE
IRVLEKNRDD EIAVIEEVTR ERLKALLTGQ KCDTPVKKGK KTILAKGDKI TAALFDEVPT
SQFEKLAVTS DSVTEQAHRV FEWYRTQVDA CREEFEARIS RYGAGEELPP GVIKMVKVYV
AMKRVLSTGD KMAGRHGNKG VVSRILPQED LPYFEDGTTV DMVLNPLGVP SRMNVGQILE
IHLGRAARVL GDQISTMLEE KKYKDLKKKL SAVFNKEIPA AEIEAMSSAR LCEFASEYKD
GVHMETPVFD GAKEAEIKAL LKEGGADETG QAILYDGRTG QPFDERITVG TMYMLKLHHL
VDDKLHARSI GPYSLVTQQP LGGKAQFGGQ RLGEMEVWAM EAYGAAYALQ EFLTVKSDDI
AGRTRMYEKI VKGQNVLDPG IPESFKVLTK EMKALGLDVT LIEQQDKE
|
|---|
| |