| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0572 |
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| Symbol | |
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| ID | 5693396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 642120 |
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| End bp | 643499 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641263158 |
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| Product | PAS modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001528459 |
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| Protein GI | 158520589 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAA AGAAAACCGA CAACACGCTG CCGCAAGACG TGACCGGCAT TATCCTGGAG
AGCATCTCCG ACGGGGTGTT TACCGTGGAT AACAACTGGC GGATCACCTC TTTTAACCGG
GCCGCTGAAA AGATCACCGG CATTCCCAGA AAAGAGGCCC TGGGCCGTCA CTGCTGGGAG
GTCTTTCGCT CCAACATGTG CGAGGCGGAG TGTGCCCTGA AAAAGACCCG TAAAGAGGGC
AAGCCCTTTG TCAGCACCGA CAGCTATATC ATCAACAGCG AAAAAAAGCG CATTCCCGTC
ACGGTATCCA CGGCCCTGCT CAAGGATGAC GACGGTGAAG TGGTGGGATG TGTGGAGACC
TTTCGGGACC ACAGCCAGCT GGAGGAGCTG CGAAAGGAGT TGTCCGATAC CTGGCGCATG
GGCGACATTG TCAGCCGCAG CCCGGCCATG CGCCGCATTC TGAAGATGCT GCCCCAGGTG
GCGGAAAGCG ACAGCGTGGT CTTGATCGAG GGAGAGACCG GCACCGGTAA GGAGCTGACC
GCCAAGGCCC TGCACAGCCT GAGTTTTCGC AAAGACAAGC CTTTTGTGAC GGTAAACTGC
GGGGCCTTTC CGGACACGCT GCTGGAGTCC GAGCTGTTCG GGTACAAGGC CGGGGCCTTT
ACCCACGCGG TCAAGGACAA GCAGGGCCTG TTTGCCGCGG CCAATGGCGG CACCCTGTTT
CTCGATGAAA TCGGCGAAAC CAGCCCGGCT TTCCAGGTGC GGCTGCTGCG GGTGCTGGAA
GATCGCGCCT TTACCCCTCT GGGCACGGTG AAAAAAGAGA AGACCGACGT GCGGATTCTT
GCCGCCACCA ATGCCGGCCT TGCAAAAATG GTGGAAGCCG GTACCTTTCG CCAGGACCTG
TTTTACCGCA TCAACGTGAT TCGCCTGGCC CTTCCGCCCC TGCGCCAGCG CATGGAAGAT
GTGCCCCTGC TGGTGGACCA TTTTATCGAT CGGCTCAACC GGCTTCGGGG CAAGACCATA
TCCGGCATCG ACCAGGAGGC ACTGGAGGTA CTGATGACCC ACCGTTTTCC CGGCAATATT
AGGGAGTTGG AAAACATCGT CGAATACGCC TTTGTGCTGT GCAGCGATGA TCGCATCGGG
GTGCGCCACC TGCCCGCCGA CCTGGTCCGG CAGGAGGCAG AGCCGTCTGC CGGGGACCAT
GGGTTCGATG ACCCGGTAAG GTCGGCCGAG GTTCAGGCCA TCACCGACGC CCTTGCGCGC
AACGACTATA ACCGAAATGC CGCTGCCAGG GACCTGGGCA TTCACAAGAG TACCCTGTTT
CGCAAGATGC ACCGGCTGGG CATTCCCCTG CCCGACCGGG ACGGCCGCAC AAAGGCCTGA
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| Protein sequence | MAKKKTDNTL PQDVTGIILE SISDGVFTVD NNWRITSFNR AAEKITGIPR KEALGRHCWE
VFRSNMCEAE CALKKTRKEG KPFVSTDSYI INSEKKRIPV TVSTALLKDD DGEVVGCVET
FRDHSQLEEL RKELSDTWRM GDIVSRSPAM RRILKMLPQV AESDSVVLIE GETGTGKELT
AKALHSLSFR KDKPFVTVNC GAFPDTLLES ELFGYKAGAF THAVKDKQGL FAAANGGTLF
LDEIGETSPA FQVRLLRVLE DRAFTPLGTV KKEKTDVRIL AATNAGLAKM VEAGTFRQDL
FYRINVIRLA LPPLRQRMED VPLLVDHFID RLNRLRGKTI SGIDQEALEV LMTHRFPGNI
RELENIVEYA FVLCSDDRIG VRHLPADLVR QEAEPSAGDH GFDDPVRSAE VQAITDALAR
NDYNRNAAAR DLGIHKSTLF RKMHRLGIPL PDRDGRTKA
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