Gene Dole_0288 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0288 
Symbol 
ID5693106 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp331373 
End bp332584 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content45% 
IMG OID641262868 
Productintegrase family protein 
Protein accessionYP_001528175 
Protein GI158520305 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAGGATA AGCTGATGGC GAAAAAACAA GACAGGTATT TGCAGAAGCG TGACAACACC 
TTTTATTTCC GTAAAAAGCA TAATGGCAAA GTGTTTAAGC GATCATTGAA TACAACTGAC
AAGCGGACAG CTAGGGACCT TCGGAATTTT TACCTCAGAA ACCTCGTTGA ATACGGACAA
CTGGATGCAC CTGAAAAGGT GGACTATGAT GTCATCACTT TCGGGGAGGT TGCGAAAGAA
TGGGCTTCCA TACACAAGAA AGAGGTTCGG TATTCTACGT GGCCGGATTA CGTGTCATCA
ATGAACGGTC ATATCCTGCC TAATTTCAAA GACATGCCAA TAGCTGAAAT CACCTACGGA
GATGTGCTGA AATTCAGAAG CGGGTTGAAG GTTGGAGCCA AAAGAGCGAA CAACATTTTA
GTGCCAATGA AATCTGTTTT TGATTATGCT GATAGGGAAG GGATTATTCA GGATAACGTG
ATGCGGAAGA TAAAACGACT TTCAGAAGAA GCACCGGAGA TTCATCCTTT CTCTTATGAT
GAGGTCAATC GACTTCTAGA CGCAGTGCAT CCCTGGTATC AACCGTATTT GATTGTAGCG
TTTTTTACGG GCATGCGGGC GGGAGAGCAA AATGGTCTGT GTTGGTCAGA TTTTCTTGAA
GATATGCAAC CAGAGCCACG GATTTTTATC CGTAAAACGT ATGTGTATAA AAAGGACGGC
ATCCCGAAGA CCAAAAAGTC AAAGCGTTAT ATAAAGTGTC TTCCGCAGGT GCTTGAGGCT
CTATCGGAGC AACGGAAACT GACCGGTAAA AATAAACATA TCTTTCTGAC CATTGACGGA
AGACGGATGA CCCCGGATCA CATCCGGAAG GAGGTATGGA TTCCCGCACT AGAAAAGGCG
GGTATTGAAT ATCGTCCGCC CATTCAGACA AGGCATACTT TCGCTACCAT GATGCTTTCT
GCCGGTGAGG ATATTGGTTG GGTCCAGAAC ATGCTTGGAC ACTCCTCGTT GCAGATGATT
TTCCAGCGGT ATTATGCCTG GGTACCGGAG AAAACCCGTT CAGACGGTCA TGCGTTCATG
AAGTACGTTG GATGCCTATC CGTAACGCAA AAACAGGATG CCGGGAGTGC AGGTGAGATA
AAGGTAAAAA CGGACGAAGG GTGTACCAAT CTTGTACCAC TGGACAAATA TAGGCATAAA
AAAAGAGGCT AG
 
Protein sequence
MEDKLMAKKQ DRYLQKRDNT FYFRKKHNGK VFKRSLNTTD KRTARDLRNF YLRNLVEYGQ 
LDAPEKVDYD VITFGEVAKE WASIHKKEVR YSTWPDYVSS MNGHILPNFK DMPIAEITYG
DVLKFRSGLK VGAKRANNIL VPMKSVFDYA DREGIIQDNV MRKIKRLSEE APEIHPFSYD
EVNRLLDAVH PWYQPYLIVA FFTGMRAGEQ NGLCWSDFLE DMQPEPRIFI RKTYVYKKDG
IPKTKKSKRY IKCLPQVLEA LSEQRKLTGK NKHIFLTIDG RRMTPDHIRK EVWIPALEKA
GIEYRPPIQT RHTFATMMLS AGEDIGWVQN MLGHSSLQMI FQRYYAWVPE KTRSDGHAFM
KYVGCLSVTQ KQDAGSAGEI KVKTDEGCTN LVPLDKYRHK KRG