Gene Dole_0135 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0135 
Symbol 
ID5692950 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp148111 
End bp150051 
Gene Length1941 bp 
Protein Length646 aa 
Translation table11 
GC content62% 
IMG OID641262712 
Product1A family penicillin-binding protein 
Protein accessionYP_001528022 
Protein GI158520152 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02071] penicillin-binding protein 1B
[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.46416e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAAGA GCAGATGGCC TTTATTGCTG GTGCTGGTCG CGGGGGTTCT TGCCGGCACC 
GCCGGCGGCG TTTTTTTTGC CGTGGTCCAC GATCTTCCCC AGATTCAGGC GCTGGAGGAC
TTTTCTCCCT CGGCCATCAC CCGGGTCTAT TCCGCGGAAG GGGGCCTGAT CGCCGAGCTT
TTCGCGGAAA AACGGGATCC GGTGGCCTTT GAACAGGTAC CGCCCTGGAT CATTGCCGCC
CTGGTGGCCA CTGAAGACAA CGCCTTTTTC CGGCACCGGG GGCTGGACCT CAAGGGCATT
GCCCGGGCCG TGATCAAGGA CATTCTCACC CTGGACTTCC GGCAGGGGGG CAGCACCCTG
ACCCAGCAGC TGGCCAAGAC CCTGTTTCTG ACCTCTGAAA AAAGCCTGAT GCGCAAACTC
AAAGAGGCGG TGCTGGCCTT TCAGCTGGAA CGGCGCTACA CCAAAAACGA AATTCTGGAA
CTTTACTTAA ACCAGGTCTA TTTCGGCAGC GGCGCCTACG GCATAAAGTC CGCGGCCCGC
ATCTTCTTCA ACAAGCCGGT GGAGGCCCTC TCCCTGGCCG AGTGCGCCCT GATCGCGGGC
ATGCCCAAGG CCCCCTCCCG GTACTCCCCC CTGGTCAATC CCGACCTGGC CCTGTGGCGG
CGAAACATCG TGCTGGGCCA GATGAAAAAA AACGGCCAGA TCTCCGAGGC CGAATACCAC
CAGGCTGCAG GCGAGCCCCT GGTGCCGGCG ACCATCACCC CGCCGGTGGC CCGTCCCGAC
TATTTTATCG AATATATTCG CGGAGACCTT GAAAACGCCG TGGGCGTACA GCAGTTATAC
CGGGCCGGCC TTTCTGTTCA CACCACCCTC TCTTTACCCC TGCAGGCGGC GGCCCGGGAA
GCGGTGGCCA TGGGCATAAA GGCCCTTGAA GAACGAATGG CGGAAAAGGG CCTGACCGAA
CCGCCCCAGG CCGCGCTGGT GGCCATGGAC GTGGCCACCG GCGGAGTCCT GGCCATGGTG
GGGGGCCGCG ACTTTCAGGC CAGTCCGTTC AACCGGGCCG TTTCCGCCCG GCGCCAGCCA
GGCTCGGCCT TCAAGCCGAT CCTGTATGCC TGTGCCCTGG ATCACGGCTT TACCCAGGCC
ACCACCGTGC TCAACACGCC GGCGGTTTTC CCCGGCGCAA AAAAGGACGA CACCTGGCAG
CCGGAAAATT TTTCAAAAGA CTATTCCAGC GAAATGACCG TACGGGAAGC CCTGGTCCAC
TCCAAAAACA TTCCGGCGGT CCGGGTGATC CACCAGCTGG GACCGGCACC CGTGGCCGGT
TTTGCGGCAA AGCTGGGCAT CTCCTCGCCC CTGTCGCCCT ACCTCTCCCT GGCCCTGGGC
ACATCGGAAG TGTCTCTGAT GGAACTCACC GCCGCCTATG CCGTTTTTCC CCGCCTGGGC
AAACGGATTC AGCCCTATGG CGTGACCCGG GTGATTGACG CCCACAACCG GGTACTCTGG
CAGGCCTCCC CTTTATCACA AATCGTCATG CCGGCCGAAA ACGCCGCCAT TGTCGCGGAC
ATGCTGCGGG GGGTGGTCCT TGACGGCACC GGCAGGGCCG CCCGCAACCT GCCGTGCCCG
GTTGCCGGAA AAACCGGCAC CACGGACACT TACAAGGATG CCCTGTTTGT GGGCTTTTCC
CAGGATATTG CCGCCGGGGT CTGGGTGGGC ACCGACCGCC ACACCACCCT GGGCGCCGGT
GAAACCGGGG CACAGGCGGC CCTGCCGATA TGGAAACAGT TTATGGAAAA AACATTTGAC
ACCCGGCCCT GCCAGGGGTT TGATGTGCCC GACGGCATGG TCCGGGTCCG GGTGAATCCC
ATGACCGGAA AACGGGCCGG CGTGAATGAA GAGGGTCAGA CCATGCTGTT TACGCCGGGA
ACAGAGCCGT TGCAGCCTTG A
 
Protein sequence
MLKSRWPLLL VLVAGVLAGT AGGVFFAVVH DLPQIQALED FSPSAITRVY SAEGGLIAEL 
FAEKRDPVAF EQVPPWIIAA LVATEDNAFF RHRGLDLKGI ARAVIKDILT LDFRQGGSTL
TQQLAKTLFL TSEKSLMRKL KEAVLAFQLE RRYTKNEILE LYLNQVYFGS GAYGIKSAAR
IFFNKPVEAL SLAECALIAG MPKAPSRYSP LVNPDLALWR RNIVLGQMKK NGQISEAEYH
QAAGEPLVPA TITPPVARPD YFIEYIRGDL ENAVGVQQLY RAGLSVHTTL SLPLQAAARE
AVAMGIKALE ERMAEKGLTE PPQAALVAMD VATGGVLAMV GGRDFQASPF NRAVSARRQP
GSAFKPILYA CALDHGFTQA TTVLNTPAVF PGAKKDDTWQ PENFSKDYSS EMTVREALVH
SKNIPAVRVI HQLGPAPVAG FAAKLGISSP LSPYLSLALG TSEVSLMELT AAYAVFPRLG
KRIQPYGVTR VIDAHNRVLW QASPLSQIVM PAENAAIVAD MLRGVVLDGT GRAARNLPCP
VAGKTGTTDT YKDALFVGFS QDIAAGVWVG TDRHTTLGAG ETGAQAALPI WKQFMEKTFD
TRPCQGFDVP DGMVRVRVNP MTGKRAGVNE EGQTMLFTPG TEPLQP