| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0135 |
|---|
| Symbol | |
|---|
| ID | 5692950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 148111 |
|---|
| End bp | 150051 |
|---|
| Gene Length | 1941 bp |
|---|
| Protein Length | 646 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641262712 |
|---|
| Product | 1A family penicillin-binding protein |
|---|
| Protein accession | YP_001528022 |
|---|
| Protein GI | 158520152 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B
[TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000146416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAAGA GCAGATGGCC TTTATTGCTG GTGCTGGTCG CGGGGGTTCT TGCCGGCACC
GCCGGCGGCG TTTTTTTTGC CGTGGTCCAC GATCTTCCCC AGATTCAGGC GCTGGAGGAC
TTTTCTCCCT CGGCCATCAC CCGGGTCTAT TCCGCGGAAG GGGGCCTGAT CGCCGAGCTT
TTCGCGGAAA AACGGGATCC GGTGGCCTTT GAACAGGTAC CGCCCTGGAT CATTGCCGCC
CTGGTGGCCA CTGAAGACAA CGCCTTTTTC CGGCACCGGG GGCTGGACCT CAAGGGCATT
GCCCGGGCCG TGATCAAGGA CATTCTCACC CTGGACTTCC GGCAGGGGGG CAGCACCCTG
ACCCAGCAGC TGGCCAAGAC CCTGTTTCTG ACCTCTGAAA AAAGCCTGAT GCGCAAACTC
AAAGAGGCGG TGCTGGCCTT TCAGCTGGAA CGGCGCTACA CCAAAAACGA AATTCTGGAA
CTTTACTTAA ACCAGGTCTA TTTCGGCAGC GGCGCCTACG GCATAAAGTC CGCGGCCCGC
ATCTTCTTCA ACAAGCCGGT GGAGGCCCTC TCCCTGGCCG AGTGCGCCCT GATCGCGGGC
ATGCCCAAGG CCCCCTCCCG GTACTCCCCC CTGGTCAATC CCGACCTGGC CCTGTGGCGG
CGAAACATCG TGCTGGGCCA GATGAAAAAA AACGGCCAGA TCTCCGAGGC CGAATACCAC
CAGGCTGCAG GCGAGCCCCT GGTGCCGGCG ACCATCACCC CGCCGGTGGC CCGTCCCGAC
TATTTTATCG AATATATTCG CGGAGACCTT GAAAACGCCG TGGGCGTACA GCAGTTATAC
CGGGCCGGCC TTTCTGTTCA CACCACCCTC TCTTTACCCC TGCAGGCGGC GGCCCGGGAA
GCGGTGGCCA TGGGCATAAA GGCCCTTGAA GAACGAATGG CGGAAAAGGG CCTGACCGAA
CCGCCCCAGG CCGCGCTGGT GGCCATGGAC GTGGCCACCG GCGGAGTCCT GGCCATGGTG
GGGGGCCGCG ACTTTCAGGC CAGTCCGTTC AACCGGGCCG TTTCCGCCCG GCGCCAGCCA
GGCTCGGCCT TCAAGCCGAT CCTGTATGCC TGTGCCCTGG ATCACGGCTT TACCCAGGCC
ACCACCGTGC TCAACACGCC GGCGGTTTTC CCCGGCGCAA AAAAGGACGA CACCTGGCAG
CCGGAAAATT TTTCAAAAGA CTATTCCAGC GAAATGACCG TACGGGAAGC CCTGGTCCAC
TCCAAAAACA TTCCGGCGGT CCGGGTGATC CACCAGCTGG GACCGGCACC CGTGGCCGGT
TTTGCGGCAA AGCTGGGCAT CTCCTCGCCC CTGTCGCCCT ACCTCTCCCT GGCCCTGGGC
ACATCGGAAG TGTCTCTGAT GGAACTCACC GCCGCCTATG CCGTTTTTCC CCGCCTGGGC
AAACGGATTC AGCCCTATGG CGTGACCCGG GTGATTGACG CCCACAACCG GGTACTCTGG
CAGGCCTCCC CTTTATCACA AATCGTCATG CCGGCCGAAA ACGCCGCCAT TGTCGCGGAC
ATGCTGCGGG GGGTGGTCCT TGACGGCACC GGCAGGGCCG CCCGCAACCT GCCGTGCCCG
GTTGCCGGAA AAACCGGCAC CACGGACACT TACAAGGATG CCCTGTTTGT GGGCTTTTCC
CAGGATATTG CCGCCGGGGT CTGGGTGGGC ACCGACCGCC ACACCACCCT GGGCGCCGGT
GAAACCGGGG CACAGGCGGC CCTGCCGATA TGGAAACAGT TTATGGAAAA AACATTTGAC
ACCCGGCCCT GCCAGGGGTT TGATGTGCCC GACGGCATGG TCCGGGTCCG GGTGAATCCC
ATGACCGGAA AACGGGCCGG CGTGAATGAA GAGGGTCAGA CCATGCTGTT TACGCCGGGA
ACAGAGCCGT TGCAGCCTTG A
|
|---|
| Protein sequence | MLKSRWPLLL VLVAGVLAGT AGGVFFAVVH DLPQIQALED FSPSAITRVY SAEGGLIAEL
FAEKRDPVAF EQVPPWIIAA LVATEDNAFF RHRGLDLKGI ARAVIKDILT LDFRQGGSTL
TQQLAKTLFL TSEKSLMRKL KEAVLAFQLE RRYTKNEILE LYLNQVYFGS GAYGIKSAAR
IFFNKPVEAL SLAECALIAG MPKAPSRYSP LVNPDLALWR RNIVLGQMKK NGQISEAEYH
QAAGEPLVPA TITPPVARPD YFIEYIRGDL ENAVGVQQLY RAGLSVHTTL SLPLQAAARE
AVAMGIKALE ERMAEKGLTE PPQAALVAMD VATGGVLAMV GGRDFQASPF NRAVSARRQP
GSAFKPILYA CALDHGFTQA TTVLNTPAVF PGAKKDDTWQ PENFSKDYSS EMTVREALVH
SKNIPAVRVI HQLGPAPVAG FAAKLGISSP LSPYLSLALG TSEVSLMELT AAYAVFPRLG
KRIQPYGVTR VIDAHNRVLW QASPLSQIVM PAENAAIVAD MLRGVVLDGT GRAARNLPCP
VAGKTGTTDT YKDALFVGFS QDIAAGVWVG TDRHTTLGAG ETGAQAALPI WKQFMEKTFD
TRPCQGFDVP DGMVRVRVNP MTGKRAGVNE EGQTMLFTPG TEPLQP
|
|---|
| |