Gene Dole_0094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0094 
Symbol 
ID5692909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp103072 
End bp104205 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content38% 
IMG OID641262671 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_001527981 
Protein GI158520111 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.75987e-10 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACTTT CCGTTGAAAA AAAAGACATC ATTGAAATGC TGGCCAATGT CCAGGGGATA 
GCGGGGAAAA GGTCCAGCCT TGCCATCACT GAAAACATTT TAATTAAAAC CGGAAAAGAG
GGGATATCCG TATCCGCAAC GGATATAGAG ACCGGTTTTG AAGGTATCTA TCCGGCCACG
ATCGAAAACG AGGGCACCAT TGCCATTAAC GCGCGGCAGT TTTATGAGAT TGTAAAAAAA
ATAGACAGTA ATATTATATA TTTAAGAGAA GAAAAAAAGC AGTGGATTCA GATCAGCGAC
ACAGAGGACG GATCCCGTCT TAAATATCAG ATCATGGGTG GAGAGACTGA AAGTTTTCCT
CAACTTCCGG TCATCGCCGA TGTTTCCTAT ATAGATGTAA ATTCTGCTGA TTTTAAAAAT
ATGATTTTGT GGGCAACAGT GATCACCTCC AGTGGAACTG AAAAAAGGGC CCATGTGATC
GGCGCCAATC TGGAATATAT TAAAGACGGA AAAATAAAAA AAATAAGAAT GGTTTCAACT
GACGGAAAAA GGCTGACAAA AACAGAGTAT TCCTACAAAA AAGGAGAACC CGACACGCCG
GAGACCAGCA CGATTCTTCC CAAAAAAGCC TTAAATGAAC TGTTTAAATT TTTAAAAGAT
GAGGGAACTA TTCAGATAGG CACCCGGGAT AATTATTTTA TAGTTAAAAA TAATAATGAA
ATCATATATA TAAATCTTTT AAGCGGTGAA TACCCGAACC TTGAAACGCT TTTTTCTGAC
GAAAAGGGCA GAACCGAAAT AAAAATAAAC CGAAAAAAAT TAAAAGACAT GCTGGAACGG
ATGTCCATAT TAACGACTGA TAATTATAAG GGCGTTATTT TTACATTTGA AAAAAATATT
CTCACCATCA ATGCCCAGAA TCCGGATCGG GGAGAATCTT ATGAATGGAT GGATATTCAG
TATGATAAAA AACAGATTAA ATCCATGTTC AACCCGGATT ATTTTATTGA TGCGGTCAAT
CTGATCGAAG ATGACGAGGT CTGTCTGAAA TTAAAAGAAG ATCAGGCCCC CTGTATTGTC
TGTGGCGGCA AACATCCGGA AAATATTAAC ATCATTATGC CGATGAAAAT TTAA
 
Protein sequence
MKLSVEKKDI IEMLANVQGI AGKRSSLAIT ENILIKTGKE GISVSATDIE TGFEGIYPAT 
IENEGTIAIN ARQFYEIVKK IDSNIIYLRE EKKQWIQISD TEDGSRLKYQ IMGGETESFP
QLPVIADVSY IDVNSADFKN MILWATVITS SGTEKRAHVI GANLEYIKDG KIKKIRMVST
DGKRLTKTEY SYKKGEPDTP ETSTILPKKA LNELFKFLKD EGTIQIGTRD NYFIVKNNNE
IIYINLLSGE YPNLETLFSD EKGRTEIKIN RKKLKDMLER MSILTTDNYK GVIFTFEKNI
LTINAQNPDR GESYEWMDIQ YDKKQIKSMF NPDYFIDAVN LIEDDEVCLK LKEDQAPCIV
CGGKHPENIN IIMPMKI