Gene Dole_0054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0054 
Symbol 
ID5692868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp60975 
End bp62369 
Gene Length1395 bp 
Protein Length464 aa 
Translation table11 
GC content61% 
IMG OID641262630 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001527941 
Protein GI158520071 
COG category[J] Translation, ribosomal structure and biogenesis
[L] Replication, recombination and repair
[K] Transcription 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.536242 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAACCG ATCCGAACAC ACAGACAAAA AAAAGAGCTT CCCGAAGGCG GCGCAGCCGG 
GCCGATAAGC CGGAGACGCC GGACACGCCG ACGCCTGCTG TCAAGGATGC CGAACCGTGG
GAGAGTTCAC AGTTTGACGT GCCCCCGGAC AAAAACCGGA CCCGCTTTCA CGACATGGAC
CTGCCCGATG CCCTGATGCA CGCCATCTAC GATCTGGGCT TTACCTACTG TACGCCCATT
CAGGCGGAGA TCCTGCCCAG CACCCTGGCC GGAAGGGACG CCTTTGGCCG GGCACAGACC
GGCACCGGCA AAACCGCGGC CTTTCTGATT TCCATTCTCA CCCACATGCA CAACAATCCT
ATTACAGCCG CACGGAAACC GGGAACGCCC CGGGCCCTGG TCCTGGCGCC CACGCGGGAG
CTGGTTATCC AGATCGGCGA AGAGGCCCAA CAGCTTGCCC GGCACCTTCC GGTCAACATC
GTGTCGGTGT TCGGCGGCAT GGACTTCAAA CAGCAGCAGG ACCGGCTGAC CCGGGAACCG
GTGGATATCA TCGTGGCCAC GCCGGGACGG CTGCTTGATT TTTCCCGGCG CCGGGCCGTG
ATGCTGAAGC AGGTGGAGAT TCTGGTGATT GACGAGGCCG ACCGCATGCT GGACATGGGT
TTTATTCCGG ATGTGCGCAA GATTATTTAC GCCACCCCCC AGAAGGGTAA CCGCCAGACC
CTGCTGTTCA GCGCCACCCT TACCGAGGCC ATCACCCGGC TGGCCTCGGC ATGGACCCGG
GACCCGGTAC AGGTGGCCAT TGAGCCGGAA CATGTGGCCG TGGATTCCGT GGACCAGGTT
GTCTATATCG TCACCAGTGA CCGAAAGCTT GCCCTGCTCT ACAACATTAT CGTTCAGCAG
AACCTGAGCC GTGTCCTGGT GTTCTGCAAC CGCAAGGACG CGGTCAGCCG CCTGGCCGAC
AGGTTGACCA GATACGGCAT CAAGTGCGAA ATACTCACCG GCGACGTGCC CCAGCAGAAG
CGGTCCCGCC GGCTTGAGGA TTTCAAGTCC GGAAAGATTC GTGTGCTGGT GGCCACCGAT
GTGATGGCCC GGGGCATTCA TGTTGAAGAC ATGGACCACG TGGTCAATTT TGACCTGCCC
CATGACCCGG AAGATTATGT GCACCGCATC GGCCGCACCG GCCGGGCCGG GGCCGTGGGC
ACCTCCATCA GCTTTGCCGA CGAACGGGAC TCTTTTTATA TTCCCGATAT TGAAGACTTT
ATGGAGCGGC CCCTTCCCTG CATTGAGCCC GACTCCACCT GGCTGGAGCT GCCGCCACCG
GCGGCCCCGA AAAAAGAGCG GCCCCGAAAA ACAACGCCCC GCACCGGCCG GGTGAAGAGC
ACCCCTGGAA AGTAA
 
Protein sequence
MQTDPNTQTK KRASRRRRSR ADKPETPDTP TPAVKDAEPW ESSQFDVPPD KNRTRFHDMD 
LPDALMHAIY DLGFTYCTPI QAEILPSTLA GRDAFGRAQT GTGKTAAFLI SILTHMHNNP
ITAARKPGTP RALVLAPTRE LVIQIGEEAQ QLARHLPVNI VSVFGGMDFK QQQDRLTREP
VDIIVATPGR LLDFSRRRAV MLKQVEILVI DEADRMLDMG FIPDVRKIIY ATPQKGNRQT
LLFSATLTEA ITRLASAWTR DPVQVAIEPE HVAVDSVDQV VYIVTSDRKL ALLYNIIVQQ
NLSRVLVFCN RKDAVSRLAD RLTRYGIKCE ILTGDVPQQK RSRRLEDFKS GKIRVLVATD
VMARGIHVED MDHVVNFDLP HDPEDYVHRI GRTGRAGAVG TSISFADERD SFYIPDIEDF
MERPLPCIEP DSTWLELPPP AAPKKERPRK TTPRTGRVKS TPGK