Gene Dole_0040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_0040 
Symbol 
ID5692854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp46877 
End bp49003 
Gene Length2127 bp 
Protein Length708 aa 
Translation table11 
GC content60% 
IMG OID641262616 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_001527927 
Protein GI158520057 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[C] Energy production and conversion 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[COG1143] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGACAC AACCCGGCGT AAAACCCTGG ACAAAAATTC CCGACTATTT TGATGCCGCG 
GAAATGACCA CCGGCATTCT TGCCTTTAAT GAAGAAACCT GCAGGCGGTG CGGCATCTGC
TCTTTTATCT GCCCGGCCCG GTCCATCAAA AGCGACCGGG GGCCCATGAA ATGGAAGGAA
GGCATGCCGT GGCTGGCCAC GGTGGCGCCC GATGTTACCA ACTGCATTGC CTGCGGCTGC
TGCCTGGCCG CCTGTCCGGA GGGGGCCATC ACCATCGAAC GGTGGTTTAA TCCCGGATAC
TTTTATCAGC GACTCTCCCA GACCAGCGAC CTGGTCTATC CCAAGTGCTA CCTTTCGACA
GACCCCGCGC CGGCGGACAC GTGGCCCGCG CCGGACCCGG ACATGCTTTC TCCCCGGTAC
GGTTCCCGGG AAAAGTGGGG CATGCGGGCC AACCGTCTCC GTATGACCGG CAACGTGATT
TTGGGCGGTT CCCGGTTTTT TTTAAACGAG GCCCTTCGCG GCCGGCTGTT TTCGACGGTA
AACGGCTTTT TATCCAAAAC CCCGTCTGAC ATCTCCTGGA CTGACCTGCT GGAGGAAAAC
GCCCGCCGGG TGCCGGACAA ACCCTTTCTG GTGTATCAAA ACGAGTCGTA CACCTACCGC
CAGGTCGATG AACAGGCCAA CCGGATGGCC CGGTTTCTTC TTGCTTTGGG CGGTGGCCAG
GGGTCCGGCG TGGGCATTCT GATGCGCAAT TCCCCCCGGT TTCTGGATAT TTTTTTCGGC
GCCCAGAAGA TCGGCATGTA CGTGGTGCCC ATCAACCCGG AGCTCAAGGG TGACGGCCTT
GCCTACATCA TCAACCACAG TGACATCGAC CTGCTGGTGG CCGACGCCGA ACTGGCAGAC
GCGGTCCGGT CGGTTGCGGA CCGTTTTGAA CAGCGCAAAA AAATCATTGT CAACGACATC
GAAGCCGAGG CCCGGGGAAT GGCCGTTCCC GAAACCATGG ACCGGCTGAG CCGGGCCTAT
GCCGATTTTT CGCCCCAACA CCCGGGCACC GGTTATCGGC CGGAAGACAT CTGCATGATC
ATGTACACCT CCGGCACCAC CGGTCCGCCC AAGGGGGTTG TGTATCGCTA CAACAAAACC
TCGGTCCGGC TGATGTGCCT GGCGGCTCAC CTGATGCTCA GGCCGAGCGA CACCTACTAT
ACGCCCTATG CCCTTTGCCA CGGCAACGCG CTGCTGGCCA CCACCACCAT GACCATGGGG
GTTCGGGCCA CCATGGCCCT GGCAAGAAAA TTTTCCGCCA GCCGCTTCTG GGAGGATGTG
CGCCGGCACC GGGCCACGGT ATTCAACACC ATCGGCTCGA TCATTCCCAT TCTCATGAAA
CAGCCGGAAA AGCCCGATGA TGCCGACAAT CATGTCCGGT TTGTCACCTC CTCCGGGTGT
CCGCCGGAGA TGTGGGGGCC GTTTGAAAAA CGGTTCGGGG TCAAGCTTTA CGAGGCCTAC
GGCGCCATTG ACGGCGGCGG CAAAGGCATC TTCAACTTCG GCACGGCACC GGCCGGCTCC
CTGGGCCGGA TTCCCCGGGT GGTAAACTAC CGGCTGGTGG ACGACAGGGG CCGGGACGTG
CCTGTCGGTG TGCCGGGTGA ACTGCTCTTT GAGGCAAAAA AGACATCCGG CCGGGTGGAG
TATTACAAAA ACCCGGCAGC CAGCCGGAAA AAATCCGGTG ACGGGTGGCT GCATACCGGG
GACCTGGTAA AACAGGACAT CAACGGGTTT CTTTATTTTG TGGGCCGCAA CACCGAATCC
ATGCGAAAGG GAGGGGAAAA CGTCTCCGCC TATGAAGTGG AGCAGGTGAT CATGGACCAT
CCGGCCGTTG AGGAAGCGGC GGTCTATGCC GTGCCCTCGG ACCTGGCCGA AGACGACATT
CTGGCCGCTG TCCGCCTGGT GGCAACCAAA ACCCTGACCC CTGAAGACCT GATCGCCTTT
CTTTCCGACA GGCTGGCCCG GTTTGCCGTT CCCCGGTATA TCCGGTTTAT GGATGAATTT
CCCAAGACCA GCTCCCACCG GATCATCAAG GGCGTGCTGG AAAAAGAGGG CATCACGGAC
GACACGTTTG ACGCGCAACA GGCATAG
 
Protein sequence
MTTQPGVKPW TKIPDYFDAA EMTTGILAFN EETCRRCGIC SFICPARSIK SDRGPMKWKE 
GMPWLATVAP DVTNCIACGC CLAACPEGAI TIERWFNPGY FYQRLSQTSD LVYPKCYLST
DPAPADTWPA PDPDMLSPRY GSREKWGMRA NRLRMTGNVI LGGSRFFLNE ALRGRLFSTV
NGFLSKTPSD ISWTDLLEEN ARRVPDKPFL VYQNESYTYR QVDEQANRMA RFLLALGGGQ
GSGVGILMRN SPRFLDIFFG AQKIGMYVVP INPELKGDGL AYIINHSDID LLVADAELAD
AVRSVADRFE QRKKIIVNDI EAEARGMAVP ETMDRLSRAY ADFSPQHPGT GYRPEDICMI
MYTSGTTGPP KGVVYRYNKT SVRLMCLAAH LMLRPSDTYY TPYALCHGNA LLATTTMTMG
VRATMALARK FSASRFWEDV RRHRATVFNT IGSIIPILMK QPEKPDDADN HVRFVTSSGC
PPEMWGPFEK RFGVKLYEAY GAIDGGGKGI FNFGTAPAGS LGRIPRVVNY RLVDDRGRDV
PVGVPGELLF EAKKTSGRVE YYKNPAASRK KSGDGWLHTG DLVKQDINGF LYFVGRNTES
MRKGGENVSA YEVEQVIMDH PAVEEAAVYA VPSDLAEDDI LAAVRLVATK TLTPEDLIAF
LSDRLARFAV PRYIRFMDEF PKTSSHRIIK GVLEKEGITD DTFDAQQA