| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_7272 |
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| Symbol | |
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| ID | 5675573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 8877861 |
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| End bp | 8881166 |
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| Gene Length | 3306 bp |
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| Protein Length | 1101 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641246109 |
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| Product | patatin |
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| Protein accession | YP_001511497 |
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| Protein GI | 158318989 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03607] patatin-related protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.341762 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.239541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGCA CGTTTAGTCT TGCGGCCATG ACGGAGGGCA TGGCGGCAGT CGCCGACGAG
TCCGACGACG GGTCGACCCA GGAGGTCCGG CTCGCGGTCG TGATGACCGG CGGCGCGAGC
CTGGCGGTGT GGATGGGCGG CGTCGCCCGG GAGATCAACC TCCTGACCGG CGCCTCCGCG
CACCGTGACC GCGCCGCGGG TGACGGTCAC GTCGGCGTGG CCGGGACCGG AGACCAGGGC
CTGTCTGCCG CCGACGCGGC GGCCGCGTCC CGCTGGGCGG CGCTGCTGGA GATCCTCGAC
GTCGAGGTGT CGGTGGACGT CCTGGCCGGG GCCTCGGCGG GTGGGATCAA CGCGGCGCTG
CTCGGCTACG CCAACGCCCA CGACGCCGAC CTGGGCCCGC TGCGCGATCT GTGGATCACG
CTGGGATCAC TGCGCGAGCT GATGCGACGC CCGGGCGAGC GGAGCTTCCC GTCGCTGCTG
CGCGGCGACG CCGTGATGCT GCCCGCCCTG CAGACCGCGC TGCGCAGCCT CGAGCCCTCG
TCCCGAAGCG GTCACACCGC CGAGGCGAGG CGCGCCAGAT CCGCGCGCAC GGTTCGCCCG
ACCTCGGTGT TCATCACGAC CACGATCCTG CGCGGCGAGT CGGCGCGCTG GTCGGACGAC
CTCGGCGGCA TCGTTCGCGA CCTCGACCAC CGCGGCCTGT TCGTCTTCGG CGAGGACGAC
CTGACCGACC CCGAGGCGGC CAACCGCCTG GCGCTTGCCG CCCGGGCCAG CGCGGCCTTC
CCCGGTGCCT TCGAGCCGGC CTACATTCCC GTCCAAAGCT CGCCCGACGC GGACCATCCC
GACATGGCCG ACTACGTCAA CGCGGCCAGC GGCTTCTACG GCTCCGACGG CGGCATCCTG
GTGAACCGCC CGATCGGGCC GGCCCTGCAA GAGATCTTCG ACCGGCCGGC GCACGGGCGG
CAGGTCCGCC GCGTGCTCGC CTACGTGGTG CCCGCGCCCA ACCCGCCGGA CGACCCCACG
CCGAGCCGAG ACGACGGGTC GACGCCGACA GTCTCCGACA CGCTGCTCGG CGCCCTGGGC
GCGGCGCTGA ACCAGTCGAT CGCGAGCGAC CTGCGGCGCA TCAGGGACCA CAACGAGGCG
GTACGCGGCG TCCGCGCGAG CCGGCGCGGG CTGTTCCGCC TCGCCCCGGC CGGCGGCCCC
CGCCTCGCCG ACGAGGCAAT CTACGAGGCC TACCGCCACC GCGAGGCCGA ACGCGCCGCG
GACGTCGTCC TGAGCACGCT GGACCGGATC GTCACCGGCG CGAACGCCGG CGCGGACGCG
GCGGCGCTGC TCGCGGACCC GGCCGGACGG ACGGACCTGC GGGCCGCGGC GGTCACGGCC
GCGTTGGCGG AGTTCCCGGA CCGGCTGCCC GGCCCGGACG ACCTCGGTGA CCTTTGGCGG
CTGGGCCGCC CCGCGGTGGA CGCCGCCAAG GGCATCCTGA TTTCGATGAT CAACGAGGCC
TACGTCCTGT CGACCGACCC GGACGACCGG GTGGCGCTGG CGACGCTGGC CCGGGAGGTG
CACGCGGCGG TCGTCGCGCC CCGCGAGCAG GCCGGAGCAC ATCTGCTCCC GCTCCCGTCG
ACGCCGGCGA ACCGGGGCGG CTTCACCGTC GTCCGCCACA CCCTGCGCGA CCTGGCGGGG
GCGTCGTCCG CCGCCGTGGT GGCCGAGGCG ACCCGCCGCT GGCTGCGCGG CGCCGGCGAC
GAGGAGACCA GCCGGACCGA CCTCACGCTC GCCTGGAGCA CGCTGGGCTC GGTCACCGAG
AACCTGCGCG GTCTTCTGAC GGGCGTCCTC GCCCGCTCAG CACCATCGCG GACGGCCACA
ACCGACCTCG CGGACAGGCC CGGCCACGGG GACGGGGAGC ACGGGGGACG ACACGGGCGG
GACGGGCAGG ACGAGGACCG GCCCTTCGGG CCCGCGGCGC TGATCGCACC AGGGCCGCGC
ACCCACGCGA ACGGGCTGAG CCTCACCGCG CGGCGCCGGG TCGCCGCCCG CACCCTGCGG
GACTTCGTCG GCTACCTCCC CACACGGCGT TCGCGGGCCG CGCTGGCCCT GCTCGACCTG
CACCTGGTCA CCCACGCCCT GACCGGCGGG GACGTCGTCG ACCAGCCGGT GGAGCTGGTC
CAGGTGAGCG CGGACATCCG CTGCGGTCTG GACCCGTCAC GGGCGAGCGC CGACCGGAAG
CTGACCGGGC TCCAACTCGG CAACTTCGGC GCGTTCGCGA AGTCGTCCTG GCGGGCCAGC
GACTGGATGT GGGGCCGGTT GGACGGCGCC GCCTGGCTGG CCCGCATCCT GCTCGACCCC
CGGCGGCTGG TCCACTTACG CGATGCCGCC GCGCCGGGCG CGGAACCGCC CGACAGCACC
GCGACCTGGC TCACCGAATT CGTGGAGCTG CTGGCGACGG TCGCCGCGGG CCCCGTCACC
GCGGACGTCC TCGACGAGCT CGCCTGGCTC GACGACCCGG ACGCGGCCGT GCCGGCCGCC
CTGCCCGAGA CCGCGGCCTG GGTCGCCACC GGGATCCAAC GCGAGATCGC CGCCGGCGAG
CTGACCAGCG TCGCCGACGC CGTCCGGGCG GACATCGCCG GTGCCAGGGT CGGCTCCGCG
CCCACCCGGG AGTTCCTTGA CGCGATGGCG CCCGGCCCGG CCCAGCTCGA TCCCGCCGAC
ACCGCCCGGG TGCTGCGGGC GTGCCGCGTC TCGGACGAGC GGCTGACCGA TCGGGCCAAC
AGCCCGATCC TCGCCATCAC GGTCGCCCAG GTGCTGGCGG TCCTCACCGG GTGGCTGGCG
TCGCTGCGCG CGCTGCCGCG GCCGCTGCGT CCGGCGGTCG CGGCGGTGCG CGCCGTCGCT
CGCGTCGCCT ACGCGCTGGT GGACGACGTG ACGCGCGGCC GGCGCCGGGC GACGATCGCC
CTCGGCACGG TGCTGCTCGC CGCCGGGCTC GCGGGCGCGC TCGTCCTGTC CGGCCCGATG
GGCGGCGTGG GGCTGCTGGT GGCCGTGACG GGGCTGCTGC TGATCAGCCT CACGGGCTGG
CGGGTGCTGC CCGCGGGGCT GGCCGTCGTG GGCGTGGCGG GGCTGGCGGC GGTGGCCGCG
GCGGGGGTGA TCCCGGTCGT GGGTGACCAT CTCTTCCCCT GGCTACACGA CGACGCGGTG
CCCTACCTGG CCGATCATCC CTGGGCGTGG GCGGCCGTCT TCGGCCTGCT GATGCTCCCG
CCGGTGTGGT CACTCGCCGA ACTCCTGCGC CCGCGGCGGC GGAGCCGACA CCGGCCGGCA
AACTGA
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| Protein sequence | MSGTFSLAAM TEGMAAVADE SDDGSTQEVR LAVVMTGGAS LAVWMGGVAR EINLLTGASA
HRDRAAGDGH VGVAGTGDQG LSAADAAAAS RWAALLEILD VEVSVDVLAG ASAGGINAAL
LGYANAHDAD LGPLRDLWIT LGSLRELMRR PGERSFPSLL RGDAVMLPAL QTALRSLEPS
SRSGHTAEAR RARSARTVRP TSVFITTTIL RGESARWSDD LGGIVRDLDH RGLFVFGEDD
LTDPEAANRL ALAARASAAF PGAFEPAYIP VQSSPDADHP DMADYVNAAS GFYGSDGGIL
VNRPIGPALQ EIFDRPAHGR QVRRVLAYVV PAPNPPDDPT PSRDDGSTPT VSDTLLGALG
AALNQSIASD LRRIRDHNEA VRGVRASRRG LFRLAPAGGP RLADEAIYEA YRHREAERAA
DVVLSTLDRI VTGANAGADA AALLADPAGR TDLRAAAVTA ALAEFPDRLP GPDDLGDLWR
LGRPAVDAAK GILISMINEA YVLSTDPDDR VALATLAREV HAAVVAPREQ AGAHLLPLPS
TPANRGGFTV VRHTLRDLAG ASSAAVVAEA TRRWLRGAGD EETSRTDLTL AWSTLGSVTE
NLRGLLTGVL ARSAPSRTAT TDLADRPGHG DGEHGGRHGR DGQDEDRPFG PAALIAPGPR
THANGLSLTA RRRVAARTLR DFVGYLPTRR SRAALALLDL HLVTHALTGG DVVDQPVELV
QVSADIRCGL DPSRASADRK LTGLQLGNFG AFAKSSWRAS DWMWGRLDGA AWLARILLDP
RRLVHLRDAA APGAEPPDST ATWLTEFVEL LATVAAGPVT ADVLDELAWL DDPDAAVPAA
LPETAAWVAT GIQREIAAGE LTSVADAVRA DIAGARVGSA PTREFLDAMA PGPAQLDPAD
TARVLRACRV SDERLTDRAN SPILAITVAQ VLAVLTGWLA SLRALPRPLR PAVAAVRAVA
RVAYALVDDV TRGRRRATIA LGTVLLAAGL AGALVLSGPM GGVGLLVAVT GLLLISLTGW
RVLPAGLAVV GVAGLAAVAA AGVIPVVGDH LFPWLHDDAV PYLADHPWAW AAVFGLLMLP
PVWSLAELLR PRRRSRHRPA N
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