| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_7259 |
|---|
| Symbol | |
|---|
| ID | 5675560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 8860895 |
|---|
| End bp | 8862109 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641246096 |
|---|
| Product | aminotransferase AlaT |
|---|
| Protein accession | YP_001511484 |
|---|
| Protein GI | 158318976 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.106863 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTCG CCCAGTCCGA CAAGCTCGCC GACGTCTGCT ACGACGTCCG AGGTCCCATC
CTCGACGAGG CGACCCGGCT GGAGGCCGCA GGCCAGCGCA TCCTGAAGCT GAACATCGGC
AACCCCGCCC CGTTCGGCTT CTCCGCGCCG CCTTCGGTGC TCGCCGCCGT GGTCGAGAAC
CTCGCGGCAG CACAGGGCTA CAGCGACTCC AAGGGCCTGC TCCCCGCCCG TGAGGCCGTC
GTGCGCTACG CGGCCGGCAA GGGAATGACC AGCGTCACGC CCGACGACGT CTACCTCGGC
AACGGCGTCT CCGAGCTGAT CATGATGTCG CTGCAGGCGC TGCTGAACAA CGGCGACGAG
GTACTCCTCC CCGCTCCCGA CTACCCGCTG TGGACGGCGG TGGTCAGCCT CACCGGCGGG
CGGCCCGTGC ACTACCTGTG CGACGAGTCC GCGGGCTGGA ATCCCGACCT CGACGACATC
ATCCGCAAGA TCACCCCACG TACCCGCGCC ATCGTGATCA TCAACCCGAA CAACCCGACC
GGGGCCGTCT ACGACCGGCC GGTGCTCGAG GAGCTCATCG AGGTCGCCCG CCGGCACCAC
CTGATGCTGT TCTCCGACGA GATCTACGAC CGCATCCTCT ACGACGGCGC GGAGCACCAC
TCGCCCGCGG CGCTCGCCCC CGACCTGTTC TGCGTGACGT TCAACGGGCT GTCGAAGGCC
TACCGGTTGG CGGGCTTCCG CTCCGGGTGG ATGACCCTCT CCGGGCCCCG CCAGCACGCG
TCGAGCTACA TCGAGGGCCT GAACATCCTG GCGAACATGC GCCTGTGCGC GAACGTGCCC
GGCCAGTTCG CGCTCCAGGC CGCGCTCGCC GAGGGCAGCG GTGCCGGCGA TCTCGTCCTG
CCCGGCGGCC GGCTGCTCGA GCAGCGCGAC ACGGTGGTGA AGCTGCTCAA CGACATCCCC
GGGGTGTCGT GTGTGCCCCC GCGCGGCGCG CTGTACGCGT TCCCCCGCAT CGATCCCGAG
GTCTACCCGA TCGACGACGA CGAGAGCTTC GTGCTCGACC TGCTGCAGGC CGAGCGGATC
CTGCTGGTGC AGGGCACCGG GTTCAACTGG CCGCGGCCCG ACCATGTCCG GCTTGTGACC
TTGCCGTGCG TCGACGACCT GACCGACGCA GTCGGTCGGA TCGACCGGTT CCTGACCACC
TACGCTCGGA CCTGA
|
|---|
| Protein sequence | MEFAQSDKLA DVCYDVRGPI LDEATRLEAA GQRILKLNIG NPAPFGFSAP PSVLAAVVEN
LAAAQGYSDS KGLLPAREAV VRYAAGKGMT SVTPDDVYLG NGVSELIMMS LQALLNNGDE
VLLPAPDYPL WTAVVSLTGG RPVHYLCDES AGWNPDLDDI IRKITPRTRA IVIINPNNPT
GAVYDRPVLE ELIEVARRHH LMLFSDEIYD RILYDGAEHH SPAALAPDLF CVTFNGLSKA
YRLAGFRSGW MTLSGPRQHA SSYIEGLNIL ANMRLCANVP GQFALQAALA EGSGAGDLVL
PGGRLLEQRD TVVKLLNDIP GVSCVPPRGA LYAFPRIDPE VYPIDDDESF VLDLLQAERI
LLVQGTGFNW PRPDHVRLVT LPCVDDLTDA VGRIDRFLTT YART
|
|---|
| |