| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_7219 |
|---|
| Symbol | |
|---|
| ID | 5675520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 8815621 |
|---|
| End bp | 8816295 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 80% |
|---|
| IMG OID | 641246056 |
|---|
| Product | 2'-5' RNA ligase |
|---|
| Protein accession | YP_001511444 |
|---|
| Protein GI | 158318936 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.179856 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGGGC CGGTACCGGG CCGGGAGCGG CTCTTCGTCG CGCTGCTCCC GCCGACGGAG
GTGGTGCGCG ACCTGGCCAC CGCCGTCTCT GAGGTAACCA GCGCAGCAGG GGCCGGCCGG
GCTGGCGGAG CCGCCGGGAG CGTGGGCGTC TCCGGGAGCG TGGGCGCCGC CGGATCGCCG
GGGCCCGCCG GGGCGGGCGT GCCGCGGCTT CGCTGGGCGG ATCCGTCGCG GTGGCACGTG
ACGCTGGCGT TCCTCGGGCC GGTCGAGCCC GGGACGCGGC CCGCGCTCGC CGAACGGCTC
GGTCGGGTCG CCCACCGGCA CGGCCCGGTC GAGCTGCGCC TCGACGGCGC CGGCCGCTTC
GGCCACCGGG TGCTCTGGGC CCGGGTCGCC GGCGATCTCG GGCCGCTGGC GGCGGGGGTG
CGACGCGCGG CCGTCCGGGC CGGCGCGGAC GGCGGCGACG ACCGCCCGCT GCGGGCCCAC
CTCACCCTGG CCCGCGTTCC CGAGGGCACC GCCGCCGACC TGCGGCCACT GGTCCGCGCC
CTCGGCGAGA TCATGAAGCC GTCGGCCTGG ACGGCGCGGA CCCTGACCCT GATGAGCAGC
GTCGGTGGGC CGTCCCCCGT CTACAGCGTC GAGGGCGAGT GGGACCTGAG CGGCTCGTCA
CCGGCCGGCC GGTAG
|
|---|
| Protein sequence | MTGPVPGRER LFVALLPPTE VVRDLATAVS EVTSAAGAGR AGGAAGSVGV SGSVGAAGSP
GPAGAGVPRL RWADPSRWHV TLAFLGPVEP GTRPALAERL GRVAHRHGPV ELRLDGAGRF
GHRVLWARVA GDLGPLAAGV RRAAVRAGAD GGDDRPLRAH LTLARVPEGT AADLRPLVRA
LGEIMKPSAW TARTLTLMSS VGGPSPVYSV EGEWDLSGSS PAGR
|
|---|
| |