Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_6994 |
Symbol | |
ID | 5675305 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 8518911 |
End bp | 8521304 |
Gene Length | 2394 bp |
Protein Length | 797 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641245840 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001511231 |
Protein GI | 158318723 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.126059 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCCGGG CGTCGCAGAG TAGCGCCGAC CCCCGCGACC ACGCCGCGAC GGGGCTACTC CATGTGATCG CCCGTCAGCA GCGGGAGCTG GCGGAGCTCC GGGCGCGGTC CGCAGCCGAC GCTCTGATCG ACATGGCTGT CGGGGTCCTG GCCGAACGGC TGTGCTGCTC GGTCACCGAG GCCGGTGACC AGCTGCGCCG TCTCGCATCC GCCTCGGGGG TCACCCAGGA CGAGTTCGCC GCCGAGGTGC TCGGCGGGAC CGCCGGAACA CTCCATCGAC CCCCGCTCGA CGACGGCGCC CGGCGCCGCC TGTGGCTGGC CGAGGCCGCG GTCAGCCACG CCACCGATGG CTGCCCGGTC GCCGAGGCCG TGTTCACCGA GGTCCTGGCC CATCAGGGTG CCGTCGCCGT GGCCTTCTGG ATGCTGGAAT CCGATGGCGC GCTCACCCTG GTGGGCGAGA CCGGCCTGGG GCCGCTCGAG GCGAGCCGGT GGCAACGCAT CCCGCCGCAG CTGGACTGCG TGGCGATGCG CGCGGCCCGC GGCGCCACGC CGCAGTGGTG GCCCGAGGGC TCACCGCCCG AGGCGAACGA TCCGACCGAC GTCCCGACCG ACATCCCGAC CGACATCCCG GCGGGCGGCC GGGCGGGCGT CGGCTCGGTG CCGCGGGTGG GTCCCTGGCT CGGGGCGCGG GCGGCGCTGC CGTTCCTGCA GGCAGGCGCC GTCGTGGGCG CCGTGGAGAT CTGCTGGCCC GCCCCGCTCG CGGAGTTCAC CGCCGGGCTC CGACGCGAGC TCGTCGCGCT CGCGGACCTG TGCCTGCGCG GCCTGCACCC GGGCGGATTC TCCGCCGACA CCCGCTCGGC GCAGCCACAG ACCCTCGGCG GGCGAACGGC CTGGCTGCCC GCCCTCCTCG ACGCCGTCGC CGGGTCGGTG CTGCTGGCCC ACGCGGTGCG TGCCGAGGAC GGCGAGATCC TCGACTTCCA CGTCGACCAC GTGAACGAGG GCTTCGTCGA CCCGGCCGGC AGGCACCCGG CCCAGCTGCG CGGCCGGCGC CTGCTCGACC TCTACCCGCT CATGGCCGCC GACGCCGGCC TGCTCGAGCG GGCCGTGGCG GTCGTGCGTA CCGGAGAGCG GTACCAGGCC GACGGCATCG CCCTGCTCGT CCTGGTCGAC GACGTGCTCG TCGCCGAGGA GCTCGACGTC CGCATCGCCC CCTTCTTCGA CGGAGTCGTG ATCAGTTGGC GGCCGGTCGG CGGCGGTGAC GCGGGCGGTT CCCTGGCCGG CCACCTGCAA CGCCTCGGCC GGTTCGGCGG CTGGCAGGAG GACGTCCGCA CCGGGGCCGT GCGCTGGACC GACCACGTCT ACGAGCTCTT CCAGCGTGAC CGCACGATGT CACCCGTCCC GCTCGACGAC CTCGATCCGC ACATCCACCC GGACGACCGG GCGGCCGTGG ACCACCTGCG TGACGCGCTG TTGCGGCTCG GCCGGGCTGC CTCGGGATCG TTCCGGGTCA TCGGCAGCGA CGGGACGCTG CGCCAGCTCC GCGCCTTCGC CGAGCCGGTG ACCGACGCCG CCGGCGTGAC GGTCGCCGTC CGCGGCATCT ACCAGGACCT GACCAGCCAC TACCGCACGC AGGTCGTTCT TGACGCCACC CGGGACCAGC TCGCCGATTC GGAGGCGCGG GCCGACGGCC AGCATCAGCT CGCGCTCGCC CTGCAGCGGG CGATCCTGCC CAGCTCCGAG GAGCCCGTCG ACCTCGGCGG CCTCGCGGTC GCCGTCCGCT ACCGCCCCGC CGAGCAGGAG CACCTTGTCG GTGGCGACTG GTATGACGCG GTCACCCTGC CGACCGGCGA GGTCCTGCTC GTCGTCGGTG ACGTCGCCGG GCACAGCATC AGGACCGTGG CCGGTATGGT GACCCTGCGC AACAGCCTGC GCGGCCTCGC GGTCACCGGC GCCGGCCCCG GGCAGCTGCT GCGCTGGCTC AACAACGTCA CCTACCACCT CGCCGACAAC ATCACCGCCA CCGTCATCTG TGGCCTTTAC CGTCCCGCCG AGCGTGCGCT GCGCTGGGCC CGCGCCGGGC ATCTGCCGCC CGTGCTCGTC CGGGACGGCT CCGCCCACGC CCTTCCGATG CCCGACGGGC TCCTGCTCGG CGTCGAACCC GATGTCGACT ACCAGGAAAC CGTCCACGTT CTTGAGCCGG ACGACGTCCT GCTTCTCTTC ACCGACGGCC TCATCGAACG CCGCGGAACC GGGCTGGACG AATCCCTCCA CGCGCTGCTG CGGATCGCGG CCGCCCCGGG CTTCGACGTC TCGCACCGGG CCGATCACCT GCTCGCGCAC ACCACCCCGG ACACCGACGA CGACACCTGC CTCATCGTCA TCCGACAGTC CTGA
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Protein sequence | MSRASQSSAD PRDHAATGLL HVIARQQREL AELRARSAAD ALIDMAVGVL AERLCCSVTE AGDQLRRLAS ASGVTQDEFA AEVLGGTAGT LHRPPLDDGA RRRLWLAEAA VSHATDGCPV AEAVFTEVLA HQGAVAVAFW MLESDGALTL VGETGLGPLE ASRWQRIPPQ LDCVAMRAAR GATPQWWPEG SPPEANDPTD VPTDIPTDIP AGGRAGVGSV PRVGPWLGAR AALPFLQAGA VVGAVEICWP APLAEFTAGL RRELVALADL CLRGLHPGGF SADTRSAQPQ TLGGRTAWLP ALLDAVAGSV LLAHAVRAED GEILDFHVDH VNEGFVDPAG RHPAQLRGRR LLDLYPLMAA DAGLLERAVA VVRTGERYQA DGIALLVLVD DVLVAEELDV RIAPFFDGVV ISWRPVGGGD AGGSLAGHLQ RLGRFGGWQE DVRTGAVRWT DHVYELFQRD RTMSPVPLDD LDPHIHPDDR AAVDHLRDAL LRLGRAASGS FRVIGSDGTL RQLRAFAEPV TDAAGVTVAV RGIYQDLTSH YRTQVVLDAT RDQLADSEAR ADGQHQLALA LQRAILPSSE EPVDLGGLAV AVRYRPAEQE HLVGGDWYDA VTLPTGEVLL VVGDVAGHSI RTVAGMVTLR NSLRGLAVTG AGPGQLLRWL NNVTYHLADN ITATVICGLY RPAERALRWA RAGHLPPVLV RDGSAHALPM PDGLLLGVEP DVDYQETVHV LEPDDVLLLF TDGLIERRGT GLDESLHALL RIAAAPGFDV SHRADHLLAH TTPDTDDDTC LIVIRQS
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