| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6728 |
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| Symbol | |
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| ID | 5675041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 8180935 |
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| End bp | 8182908 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641245577 |
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| Product | Type IV secretory pathway VirB4 protein-like protein |
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| Protein accession | YP_001510968 |
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| Protein GI | 158318460 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.726364 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.776114 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGCC GCCGCAACCG CCTACACGTC GCCCCGCAGG GTGCGCCGTC CCGCAGCCGC
CGGCCCCTGG TCCCCGGCCG CGGGCAAGGG GCGGGGCAGA TGCTGCCCGT CGAGGGCCCG
GCGCTGTTCA CCCCGCCCGC GCTGGTGGTC GATGCCGGGC AGATCGAGGT CAGTGGGATC
TGCGCGACCA CGATCACCGT GGTCGGCTAC CCGCGTGAAG TCGGACCCGG GTGGATGGAG
CCGCTGCTGG CCTACCCGGG CCGCCTCGAT GTCGCCCTGC ACATCGACCC GACCCCACCC
GCGGTGGCGG CGCTGCGACT ACGCCGCCAA CTCGGCCGGC TCGAATCCGG CCGCCGCGCC
GACGCCGCGG CCGGCCGTCT CGCCGACCCC GAGCTCGACG CCGCCGCCCA AGACGCCGGG
GAGCTGGCCC GTCAGGTCGC TCGTGGTGAG GCACGCCTGT TCCGGACCGG GCTGTACCTG
ACCGTCTACG CCGATAGCCG CGAGGAGCTC GCCGAGGAAG CGGCGCGGGT CACCGCGCTG
GCGCACAGTC TGCTGCTCAC GGTGCGCCGG GCCCGGTACC GGAGCGTGCA GGGCTGGGTG
AGCACCCTGC CCCTGGGCCT GGACCTGCTC CAGATCCGCC GGGCGATGGA CACCCAGGCG
CTGGCCGCGG GGATCCCGTT CACCACCCCT GACCTGCCCC TACCCGACGT GGAACGCCCC
GGAGCCGCAC CCGTCGTCTA CGGCACGAAC CTGCACTCCG CCGGGATCGT GGCGCATGAC
CGGTGGGCGC AGCCGAACTA CAACTCCGTC ACCACCGGCG CCTCCGGCGC CGGCAAGAGC
TTCCTGATGA AACTCGACCT CCTGCGCTCC CTCTACCAGG GCGTCGAGGC CGCCATTGTT
GATCCGGAGG ACGAGTACGG CCGGCTCGCC GCCGCTGTCG GGGGCACCCG CCTCGCGCTC
GGCGAGCCTG GGGTGCACCT CAACCCCCTC GACCTGCCCG CCCACTCCCA TCACGACCCC
GACCTCCTCA CCCGCCGCGC CCTGTTCTGC CACACCCTGA TCACCACCCT GCTCGCCGGC
ACCGATGACG ACAGCGGGCT GGGAGCCGGG GGCCGGGCCG CGTTGGACGC GGCGATCCTG
AGCGCCTACC GCGCTGCCGG GATCACCCAC GACCAGGCCA CCTGGACCCG GCCCGCCCCG
CTGCTCGCCG ACATCGCCGC CGCCCTCACC GCCGCTGAGG ACCCGGCCGG CCCAGCACTC
GCCGCACGTC TCGCCCCGTT CGTCACCGGC TCGCATGCTG GCCTGTTCGC GCACGCGACC
ACCACCAGCC CGACCGGGCA CCTTGTCGTC TACTCCCTGC GGGCGCTGCC CGACGAGCTG
AAAGCCGCCG GGACGCTGCT CACCCTGGAC GCGATCTGGC GGACCGTCGC CGACCCGGCC
CGGCGACGGC GCCGTCTCGT GGTGGTGGAC GAGGGCTGGC TGCTCATGGC ACACCCCGCC
GGCGCCCGCT TCCTGTTCCG CCTCGCGAAG GCCGCCCGGA AGCACTGGGC CGGTCTGGCC
GTGGCGACCC AGGACTCCGC CGACCTCCTC AGCTCCGAGC TGGGCCGGGC GGTCGTCGCG
AACGCGGCGA CGCAGATCCT GTTGCGCCAG GACCCGACCG TGATCGACGA CCTGCGTCGC
GTGCACCGGC TCACCGATGG CGAAGCCACC CAGCTGCTCA CCGCCGGTCC CGGTGACGCC
CTGCTCCTGA CTGGGACCGG GCAGCGCACC GCCCTGCACG CCCTCGCGTC CCCCGCCGAA
TACGACCTGA TCACCACAGA TCCGGTCGAC ACCACCACCG CCACTCCCAC CGACACGGGC
CCACTCGACC CGGCCTGGGC CGAGGACCCT GCCGTCGCGG CGACCGGGCC GGCCCGCGCT
CCTCGCCGGC CGGCCGCCCG GCGGCCGGTG GACGACGACG CCGACCCGTT CTAA
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| Protein sequence | MSRRRNRLHV APQGAPSRSR RPLVPGRGQG AGQMLPVEGP ALFTPPALVV DAGQIEVSGI
CATTITVVGY PREVGPGWME PLLAYPGRLD VALHIDPTPP AVAALRLRRQ LGRLESGRRA
DAAAGRLADP ELDAAAQDAG ELARQVARGE ARLFRTGLYL TVYADSREEL AEEAARVTAL
AHSLLLTVRR ARYRSVQGWV STLPLGLDLL QIRRAMDTQA LAAGIPFTTP DLPLPDVERP
GAAPVVYGTN LHSAGIVAHD RWAQPNYNSV TTGASGAGKS FLMKLDLLRS LYQGVEAAIV
DPEDEYGRLA AAVGGTRLAL GEPGVHLNPL DLPAHSHHDP DLLTRRALFC HTLITTLLAG
TDDDSGLGAG GRAALDAAIL SAYRAAGITH DQATWTRPAP LLADIAAALT AAEDPAGPAL
AARLAPFVTG SHAGLFAHAT TTSPTGHLVV YSLRALPDEL KAAGTLLTLD AIWRTVADPA
RRRRRLVVVD EGWLLMAHPA GARFLFRLAK AARKHWAGLA VATQDSADLL SSELGRAVVA
NAATQILLRQ DPTVIDDLRR VHRLTDGEAT QLLTAGPGDA LLLTGTGQRT ALHALASPAE
YDLITTDPVD TTTATPTDTG PLDPAWAEDP AVAATGPARA PRRPAARRPV DDDADPF
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