| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6091 |
|---|
| Symbol | |
|---|
| ID | 5674412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7415429 |
|---|
| End bp | 7416802 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641244943 |
|---|
| Product | NADH dehydrogenase subunit D |
|---|
| Protein accession | YP_001510341 |
|---|
| Protein GI | 158317833 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.489458 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0112827 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC ACACCGAGAC GCCCGTCGAC GGTTCGGCCG AGACCATCAC CGGCGCGCAG
CCCTACGAGG CCGGGTTCAC CGAGTCCTCC GCCGGCCGCG TCTACACCGT GACGGGCGGT
GACTGGGAGC AGGTCCTCGG CGTCGGCGAG GACGACGGTG AGCGGATCAC CGTCAACATG
GGCCCGCAGC ACCCGTCCAC CCACGGCGTG CTGCGGCTGG TGCTGGAGAT CGAGGGCGAG
ACGGTTACCG AGACCCGCCT GGTCATCGGC TACCTGCACA CCGGGATCGA GAAGAGCTGC
GAGTACCGCA CCTGGACGCA GGCGGTCACG TTCCTCACCC GCGCCGACTA CCTCTCGCCG
CTGTACAACG AGGCGGCGTA CTGCCTGTCG GTGGAGAAGC TGCTCGGCAT CACCGGCGAG
GTGCCGGAGC GGGCGACCGT CATCCGGGTG CTCGTCATGG AGCTGCAGCG GATCGCCTCG
CACCTGGTGT GGCTGGCGAC CGGAGGCATG GAGCTCGGCG CCACCACCGG CATGATCTTC
GGGTTCCGTG AGCGGGAGAA GATCCTCGAC CTGCTCGAGA CGATCACCGG CCTGCGGATG
AACCACGCCT ACATCCGCCC CGGCGGCCTG GCCCAGGACA TCCCGGACGA GGTGATCCCG
GAGATCCGCG CGTTCCTCGA CTACATGCCC AAGCGCATCC GCGAGTACCA CGCGCTGCTG
ACCGGCCAGC CCATCTGGAA GGCGCGGATG GTCGACGTCA ACTTCCTCGA CGCCGCCGCC
TGCCTCGCGC TGGGGACGAC CGGCCCGGTG CTGCGCGCCG CCGGTCTGCC CTGGGACCTG
CGCAAGACCA TGCCGTACTG CGGCTACGAG ACCTACGAGT TCGACGTCCC GACCGCGCTC
GAGGGCGACT CCTACGCCCG GTACCTGGTG CGGATCGAGG AGATGGGCGA GTCCCTCAAG
ATCATCGAGC AGTGCCTGGA CCGGCTGCGC CCCGGCCCGG TCATGGTCGC CGACAAGAAG
ATCGCCTGGC CGTCGCAGCT GGCCATCGGC TCGGATGGCA TGGGCAACTC GCTCGAGTAC
ATCCGCAAGA TCATGGGGAC CTCGATGGAG GCCCTGATCC ACCACTTCAA GCTCGTCACC
GAGGGCTTCC GGGTGCCCGC CGGCCAGGTG TACACGCAGA TCGAGTCGCC GCGCGGCGAG
CTCGGCTACC ACGTCGTCAG CGACGGCGGC ACCAGGCCGT TCCGCGTCCA CGTGCGGGAC
CCAAGCTTCG TGAACCTGCA GGCCGTGCCC GCGCTGACGG AGGGCGGGCA GGTGGCCGAC
GTGATCGTCG GCGTCGCCTC CGTCGACCCG GTGCTCGGGG GAGTTGATCG CTGA
|
|---|
| Protein sequence | MSTHTETPVD GSAETITGAQ PYEAGFTESS AGRVYTVTGG DWEQVLGVGE DDGERITVNM
GPQHPSTHGV LRLVLEIEGE TVTETRLVIG YLHTGIEKSC EYRTWTQAVT FLTRADYLSP
LYNEAAYCLS VEKLLGITGE VPERATVIRV LVMELQRIAS HLVWLATGGM ELGATTGMIF
GFREREKILD LLETITGLRM NHAYIRPGGL AQDIPDEVIP EIRAFLDYMP KRIREYHALL
TGQPIWKARM VDVNFLDAAA CLALGTTGPV LRAAGLPWDL RKTMPYCGYE TYEFDVPTAL
EGDSYARYLV RIEEMGESLK IIEQCLDRLR PGPVMVADKK IAWPSQLAIG SDGMGNSLEY
IRKIMGTSME ALIHHFKLVT EGFRVPAGQV YTQIESPRGE LGYHVVSDGG TRPFRVHVRD
PSFVNLQAVP ALTEGGQVAD VIVGVASVDP VLGGVDR
|
|---|
| |