Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_6057 |
Symbol | rpoB |
ID | 5674378 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 7372910 |
End bp | 7376335 |
Gene Length | 3426 bp |
Protein Length | 1141 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641244905 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001510307 |
Protein GI | 158317799 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.492439 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCCGCCT CGCGTTCCGC CTCCCGCATC TCGTTCGCAA AGATCATCGA GCCCCTCGAG GTCCCGGATC TTCTCGCCCT GCAGACGCAG TCATTCGATT GGCTGATCGG CAACGACATC TGGGCGGAGC GGGTCCAGGA GGCCATCGAC GCCGACAGGA ACGATGTCCC CATCACCTCC GGGCTCGAGG AGGTCTTCGA GGAGATCTCC CCGATCGAGG ACTTCTCCGG CTCGATGTCC CTGTCCTTCC GGGATCACAG GTTTGAGCCC CCCAAGTACT CCGTCGAGGA GTGCAAGGAC AAGGACATGA CCTACTCGGC GCCGCTGTTC GTCACCGCCG AGTTCACCAA CAACACCACC GGTGAGATCA AGAGCCAGAC GGTGTTCATG GGCGACTTCC CGCTCATGAC CCCGAAGGGC ACGTTCGTCA TCAACGGCAC CGAGCGCGTG GTGGTCAGCC AGCTCGTCCG GTCCCCGGGT GTGTACTTCG AGAAGGCGAT CGACAAGGCG TCCGACAAGG ATCTGTTCTC CTGCAAGGTC ATCCCCTCAC GGGGGGCCTG GCTCGAGTTC GAGATCGACA AGCGGGACAC CGTCGGCGTC CGCATCGACC GCAAGCGCCG CCAGTCGGTC ACCGTCCTGC TCAAGGCCCT GGGCTGGGAT GAGGCCCGCA TCCTGGAGCG CTTCGGCGAC TTCCCGTCGA TGCGGGTCAC CCTGGAGAAG GACCACACCT CCAGCCAGGA CGACGCCCTG CTCGACATCT ACCGCAAGCT GCGCCCGGGC GAGCCGCCGA CGCGGGAGTC GGCGCAGACC CTGCTGGAGA ACCTCTTCTT CAACCCGAAG CGCTACGACC TGGCCAAGGT CGGCCGCTAC AAGGTGAACA AGAAGCTGAC CCTCGAGGTC GCGCACGATG TCGGCGTCCT CACCGAGGAC GACGTCGTCC GCACGATCGA GTACATCGTC AAGCTGCACG CGGGCCAGGA CCCGGACAAC TACGAGGTCG ACGACATCGA CCACTTCGGC AACCGGCGCC TGCGCACGGT CGGCGAGCTC ATCCAGAACC AGGTCCGCCT CGGCCTGGCC CGGATGGAGC GCGTCGTCCG CGAGCGCATG ACGACCCAGG ACGTCGAGGC GATCACGCCG CAGACCCTGA TCAACATCCG GCCGGTCGTC GCCTCCATCA AGGAGTTCTT CGGCACCAGC CAGCTCTCCC AGTTCATGGA CCAGACGAAC CCGCTGGCCG GCCTGACCCA CAAGCGCCGC CTGTCGGCGC TGGGCCCCGG CGGTCTGTCT CGGGAGCGGG CCGGCTTCGA GGTCCGCGAC GTGCACCCCA GCCACTACGG CCGGATGTGC CCGATCGAGA CGCCGGAGGG CCCGAACATC GGCCTGATCG GCTCGCTGTC GACGTTCGCG CGGGTCAACC CGTTCGGCTT CGTCGAGACC CCGTACCGCA AGGTGGAGAA CGGCCGGGTC ACCGGCCAGA TCGACTACCT GACCGCGGAC GAGGAGGACC GCCACGTCAA GGCGCAGGCG AACACCCCGC TGAACGCGGA CGGCACGTTC GCCGAGGACC GCGTCCTGGT CCGCCGCAAG GGCGGTGAGG TCGAGTTCAT CCCGCCGGAC GAGGTCGACT ACATGGACGT CTCGCCGCGG CAGATGGTGT CCGTCGCGAC GGCGATGATC CCCTTCCTTG AGCACGACGA TGCCAACCGT GCCCTGATGG GCTCGAACAT GCAGCGCCAG TCGGTTCCGC TGCTGCGTTC CGAGGCTCCG CTGGTCGGCA CCGGCATGGA GGCCCGCGCG GCCAAGGACG CCGGCGACGT GGTCGTCTGC GCCCAGTCCG GCGTGGTCGA GGATCTGTCG GCCGACTACA TCACCGTCAT GCACGACGAC GGGACGCGGC GCACCTACCG CCTGGCGAAG TTCCGCCGGT CGAACCAGGG CACCTGCATC AACCAGAAGC CGATCGTCTT CGAGGGCGAC CGCGTCGAGG CCGGTCAGGT CATCGCCGAC GGCCCGTGCA CCGACAACGG CGAGATGGCG CTGGGCAAGA ACCTCCTGGT GGCCTTCATG CCGTGGGAGG GGCACAACTA CGAGGACGCG ATCATCCTCT CCCAGCGCCT GGTGCAGGAC GACGTCCTCT CCTCGATCCA CATCGAGGAG CACGAGGTCG ATGCCCGGGA CACCAAGCTG GGCCCGGAGG AGATCACCCG GGACATCCCG AACGTCGCCG AGGAGGTTCT CGCCGACCTC GACGAGCGCG GCATCATCCG GATCGGTGCC GAGGTGTCGC CCGGTGACGT GCTGGTCGGC AAGGTCACCC CGAAGGGCGA GACCGAGCTG ACCCCGGAGG AGCGCCTGCT GCGCGCGATC TTCGGTGAGA AGGCCCGGGA GGTCCGCGAC ACCTCGCTGA AGGTGCCGCA CGGCGAGTCC GGCAAGGTCA TCGGTGTCCG CGTGTTCTCC CGCGAGGACG GCGACGAGCT GCCCCCGGGC GTGAACGAGC TGGTCCGCGT CTACGTGGCC CAGAAGCGCA AGATCACTGA CGGTGACAAG CTCGCCGGCC GGCACGGCAA CAAGGGCGTC ATCGCCAAGA TCCTGCCGGT GGAGGACATG CCCTTCCTCC CCGACGGCAC CGCCGTCGAC GTCGTGCTGA ACCCGCACGG TGTGCCGCGT CGTATGAACA TCGGCCAGAT CCTGGAGACG CACCTCGGCT GGGTCGCCAA GACCGGCTGG CAGGTCGACT CCGGCGCGGA GGGCTGGAAG GAGCGCCTGC GCGGCATCGG CGCCGACGCG GCCCCGCCCG GGACCAACGT GGCGACGCCG GTGTTCGACG GTGCCCGCGA GGAGGAGATC ACCGGCCTGC TCGACGCCAC CCTGCCCAAC CGGGACGGTC AGCAGATGAT CGGTTCCTCC GGCAAGGCCG AGCTGTACGA CGGCCGCACC GGAGAGCCGT ACCCGTACCC CGTGGCGGTT GGCTACATCT ACATCCTCAA GCTCCTGCAC CTGGTCGACG ACAAGATCCA CGCCCGGTCG ACCGGCCCCT ACTCGATGAT CACGCAGCAG CCGCTCGGTG GCAAGGCCCA GTTCGGTGGC CAGCGGTTCG GTGAGATGGA GGTGTGGGCG CTCGAGGCGT ACGGCGCCGC CTACGCCCTG CAGGAACTCC TCACGATCAA GTCGGACGAC GTTGTCGGCC GAGTGAAGGT CTATGAGGCG ATCGTCAAGG GCGAGAACAT CCCGGAACCC GGTATCCCGG AGTCGTTCAA GGTCCTCATC AAGGAGATGC AGTCGCTGTG CCTCAACGTC GAGGTGCTCT CCAGCGACGG TGTCTCGATC GAGATGCGGG ACACCGACGA GGACGTCTTC CGCGCGGCGG AGGAGCTCGG AATCGACCTG TCACGGCGCG AGCCCAGCAG CGTCGAAGAG GTCTGA
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Protein sequence | MAASRSASRI SFAKIIEPLE VPDLLALQTQ SFDWLIGNDI WAERVQEAID ADRNDVPITS GLEEVFEEIS PIEDFSGSMS LSFRDHRFEP PKYSVEECKD KDMTYSAPLF VTAEFTNNTT GEIKSQTVFM GDFPLMTPKG TFVINGTERV VVSQLVRSPG VYFEKAIDKA SDKDLFSCKV IPSRGAWLEF EIDKRDTVGV RIDRKRRQSV TVLLKALGWD EARILERFGD FPSMRVTLEK DHTSSQDDAL LDIYRKLRPG EPPTRESAQT LLENLFFNPK RYDLAKVGRY KVNKKLTLEV AHDVGVLTED DVVRTIEYIV KLHAGQDPDN YEVDDIDHFG NRRLRTVGEL IQNQVRLGLA RMERVVRERM TTQDVEAITP QTLINIRPVV ASIKEFFGTS QLSQFMDQTN PLAGLTHKRR LSALGPGGLS RERAGFEVRD VHPSHYGRMC PIETPEGPNI GLIGSLSTFA RVNPFGFVET PYRKVENGRV TGQIDYLTAD EEDRHVKAQA NTPLNADGTF AEDRVLVRRK GGEVEFIPPD EVDYMDVSPR QMVSVATAMI PFLEHDDANR ALMGSNMQRQ SVPLLRSEAP LVGTGMEARA AKDAGDVVVC AQSGVVEDLS ADYITVMHDD GTRRTYRLAK FRRSNQGTCI NQKPIVFEGD RVEAGQVIAD GPCTDNGEMA LGKNLLVAFM PWEGHNYEDA IILSQRLVQD DVLSSIHIEE HEVDARDTKL GPEEITRDIP NVAEEVLADL DERGIIRIGA EVSPGDVLVG KVTPKGETEL TPEERLLRAI FGEKAREVRD TSLKVPHGES GKVIGVRVFS REDGDELPPG VNELVRVYVA QKRKITDGDK LAGRHGNKGV IAKILPVEDM PFLPDGTAVD VVLNPHGVPR RMNIGQILET HLGWVAKTGW QVDSGAEGWK ERLRGIGADA APPGTNVATP VFDGAREEEI TGLLDATLPN RDGQQMIGSS GKAELYDGRT GEPYPYPVAV GYIYILKLLH LVDDKIHARS TGPYSMITQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYAL QELLTIKSDD VVGRVKVYEA IVKGENIPEP GIPESFKVLI KEMQSLCLNV EVLSSDGVSI EMRDTDEDVF RAAEELGIDL SRREPSSVEE V
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