| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5716 |
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| Symbol | |
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| ID | 5674042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 6937609 |
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| End bp | 6938511 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641244569 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_001509972 |
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| Protein GI | 158317464 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.038374 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGG GTGTCCCGGG CAGCTCCACC GTCGCCGAGG CCTACGCCTC CTGCGAGGCG
TTGACGCGGG AGGCCGCGCG GAACTTCAGC TACGGCATCC GCCTGCTGCC GGCGGAGAAG
CGGGGCGCGC TGTCCGCGGT GTACGCCCTG GCGCGTCGCC TCGACGACAT CGGCGACGGC
GACCTGCCAG ATGAGGAGAA GCTCGCCGGC CTGGAGAAGG TCCGCGCAGA CGTCCGCGTG
CTGGACATCA ACAGCTCCGA CCCGGTGATG GTGGCGCTCG CGGACACCGC CCGCCGCTTC
CCCGTCCCGA TGGAAGCCTT CATCGAGCTC GCCGACGGGG TCGAGAGCGA TGTCCACGGG
GTCCCCTACG AGACGTTCGA CGACATGGTC GGGTACTGCC GGCTGGTGGC GGGCACCATC
GGCCGGCTCT CGCTGGGCAT CTTCGGCGTG GACGGGTCGG CCGGTGACGC CCGCTCGGCC
GAGATCGCCG ACGCGCTCGG CGTGGCGCTC CAGCAGACCA ACATCCTGCG CGACGTCCGC
GAGGACCTCC TCAACGGCCG CATCTACCTG CCCTCGACGG AGCTGGAGAA AGCCGGCGTC
ACCCTGGTGG TGAGCCCGGC CGGGCGCCTC GGTGGGCCGG AGGACGCACT GGTGGACTAT
CTGCGCGACT GCGCCGCGCG CGCCGACGAG TGGTACACGC GGGGCCTGGC GCTGCTCGGC
CTGCTCGACC GGCGCAGCGC CGCCTGCTGC GGTGCCATGG CCGGGATCTA CCTGCGCCTG
AACCGGCGCA TCCGGCAGGA CCCCACCGCG GTCCTGGAAC GCCGGCTGTC ACTGCCGGGC
TGGGAGAAGG CGGTCGTGGC CGCCCGCAGC CTCGCCGGCA GATCGGAGGC GAGAGCGGCA
TGA
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| Protein sequence | MSAGVPGSST VAEAYASCEA LTREAARNFS YGIRLLPAEK RGALSAVYAL ARRLDDIGDG
DLPDEEKLAG LEKVRADVRV LDINSSDPVM VALADTARRF PVPMEAFIEL ADGVESDVHG
VPYETFDDMV GYCRLVAGTI GRLSLGIFGV DGSAGDARSA EIADALGVAL QQTNILRDVR
EDLLNGRIYL PSTELEKAGV TLVVSPAGRL GGPEDALVDY LRDCAARADE WYTRGLALLG
LLDRRSAACC GAMAGIYLRL NRRIRQDPTA VLERRLSLPG WEKAVVAARS LAGRSEARAA
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