| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5712 |
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| Symbol | |
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| ID | 5674038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 6930669 |
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| End bp | 6932642 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641244565 |
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| Product | hydroxymethylbutenyl pyrophosphate reductase |
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| Protein accession | YP_001509968 |
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| Protein GI | 158317460 |
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| COG category | [F] Nucleotide transport and metabolism
[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein
[COG0775] Nucleoside phosphorylase |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0500894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.65534 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATCC CGGCAACAGA CAACGGGGGC GACGCCGACC ACGGCGGTTC GCCCACCGTT
ACCCCGCGCG ACGCCACGGC GCCGAGCCTC GGACCGCCGG GCTTCGGCCC GGCCGCCGTG
CGGCCCGCGT CGCCCGTCGC GCCCGCGTCG CCGGTCGTGC CTGTGGTGCC GGCGGCACCG
GTGGTGCCCG CAGGTGCCGC GGTGCCCGCG GGCGCGGTGC CGAGGGCGGC CATCCCCGAG
CAGGCCGGCG CGGTGCCGCC GGCCGGCGGG CCGTCGCGGG CCGGTTCGGC GCTGCCGTCG
GTCGGGTCGC GGCGGGGGGC GGCTTCGGCC GCGAGCCCGC TGGTGACCCG GGCGGTGCCT
GCGGCGGTGA GCCCGGCCCC GAACGGGGCC GCGGCCCGGG CACGCACGGT GAGCGCGAAG
GGGTCGCCGG TCCAGCCGGC GCCCCGCACC CCGCGTCTCG TCGTCGCCGC CCCGCTGCGT
CTCGAGGGAT TCGCGATCGG CCGGGCCGAC CTGCCGCCCG GCACCGTGAT CGTGCGGACC
GGGATGGGCC CGGACAAGGC GCACCGCGCG AACCGCGTGG TCCGCGATGC CCGGCCGGAC
GCGGTGGCCG TCGTCGGTCT CGCCGGTGGG CTCACCGTCG AGACGAAGCC CGGCGACGTG
GTCGTCGCGA GCGAGGTGCG CCTCGCCGAC GGCACGGTGA CGGGGACCTG CCCGACCGCC
CCGCTGCTGG CCGGCGAACT GCGCCGTGCC GGCCTCCGGG TGCACGTCGG ACCGGTCGTG
TCGGTAGCCC AGGTGGCGGT CGGATCGGCC CGCGCCGAGC TGGCCGCGAC CGGTGCCATC
GCCGTGGACA TGGAGTCCGC TGCCCTCGCC CCCGGTGCTG GCACCCGCCC GTTCGCGGTG
ATCCGGGTGA TCGTGGACAC CCCCGACCAG CCGCTGGGCC GGATTGACCT GGTCCGGCGC
GGGGTGGCCG GGCTGCGCAC GATCAACCAG CTCGGCCCGG CGATCCGCGC GTGGGTGGAG
GCGGTCAGCA GCCGTCGGCT GCTCCTCGCC GAGCCGCGCG CCTTCTGTGC CGGGGTCGAG
CGCGCCATCG AGGTGGTCGA ACGGGCGCTG GAGATCCACG GCGCACCGGT CTACGTCCGC
AAGCAGATCG TGCACAACAC CCACGTCGTG GCCGACCTGG CCAGCCGCGG CGCGGTCTTC
GTCGAGGAGT TGGACGAGGT CCCGCCCGGC GCGACCGTGG TCTTCTCCGC GCACGGGGTC
GCCCCCGCGA TCTGGGACGA GGCGGGCGAG CGCGACCTGG CGGTCATCGA CGCCACCTGC
CCGCTGGTGG AGAAGGTGCA TGCCGAGGCG CGGCGGTTCA CCGCGCGTGG CGACACCGTC
CTGCTCATCG GGCACTCCGG CCACGAGGAG GTGGACGGGA CGCTCGGCGA GGCACCGGGG
CGGATCCAAC TGGTCGAGTC CGCCGCCGCG GTCGAGGACA TCGAGGTCGC CGACCCGGAG
CGGGTCACCT ACCTCATGCA GACCACGCTC GCCGTGGACG AGGCCGAGGA GGTCGTCGAC
GCGCTGCGCG ACCGCTTCCC GGCCGTCGTC GGCCCCGGCT CGGCCGACAT CTGCTACGCG
ACGTCCAACC GGCAGAACGC GGTTCGCCGG GTGGCCGCCG AGGCGGAGCT CGTCCTGGTC
GTCGGGTCGG AGAACAGCTC GAACTCGCGC CGGCTGGTCG AGGTCAGCGA GCGGGACGGC
GTCGCCGCGC ACCTTGTCGA GAGCGTCGAG GACGTCCAGC TCGACTGGCT CAAGGGGGTG
CGGACCGTCG GCATCTCCGC CGGGGCCTCC GCGCCGCCGC TGCTCGTCGA GGAGCTGACG
GCGGCACTGT CGGGGCTGGG GTCGGCGTCG GTGTCGGTCC GTTCCGTGGG CTCGGAGTCG
ATCTCCTTCC ACCTGCCGAA GGAGGTCCGT CGACCGCTCT CCGAACGGAG ATGA
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| Protein sequence | MSIPATDNGG DADHGGSPTV TPRDATAPSL GPPGFGPAAV RPASPVAPAS PVVPVVPAAP
VVPAGAAVPA GAVPRAAIPE QAGAVPPAGG PSRAGSALPS VGSRRGAASA ASPLVTRAVP
AAVSPAPNGA AARARTVSAK GSPVQPAPRT PRLVVAAPLR LEGFAIGRAD LPPGTVIVRT
GMGPDKAHRA NRVVRDARPD AVAVVGLAGG LTVETKPGDV VVASEVRLAD GTVTGTCPTA
PLLAGELRRA GLRVHVGPVV SVAQVAVGSA RAELAATGAI AVDMESAALA PGAGTRPFAV
IRVIVDTPDQ PLGRIDLVRR GVAGLRTINQ LGPAIRAWVE AVSSRRLLLA EPRAFCAGVE
RAIEVVERAL EIHGAPVYVR KQIVHNTHVV ADLASRGAVF VEELDEVPPG ATVVFSAHGV
APAIWDEAGE RDLAVIDATC PLVEKVHAEA RRFTARGDTV LLIGHSGHEE VDGTLGEAPG
RIQLVESAAA VEDIEVADPE RVTYLMQTTL AVDEAEEVVD ALRDRFPAVV GPGSADICYA
TSNRQNAVRR VAAEAELVLV VGSENSSNSR RLVEVSERDG VAAHLVESVE DVQLDWLKGV
RTVGISAGAS APPLLVEELT AALSGLGSAS VSVRSVGSES ISFHLPKEVR RPLSERR
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