Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_5595 |
Symbol | |
ID | 5673923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 6784319 |
End bp | 6786835 |
Gene Length | 2517 bp |
Protein Length | 838 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641244449 |
Product | FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits |
Protein accession | YP_001509853 |
Protein GI | 158317345 |
COG category | [V] Defense mechanisms |
COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0852343 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00394117 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCAGACGA CGTATCTGAG AGTCGTCACC GAGGCCGGTG CCGCCACTGT GCCGGCAGGT GAGCAGTTCA TCATCGGACG TGCTCGGACC GCGGACTACG TCATCGCCGA CAGCCGCGTC TCCCGGCGGC ATCTGCTGGT CGAGCAGACC GGATCGGGCT GGTCCGTCCG CGACATCAGC TCCAACGGCA CCTGGGTCGA CGGCCAGCGG ATGCCCGAGT CGGTGAGCGT ACAGGGCGAG GTCCGGTTCC GGCTCGGCAC TCCCAGCGGG CCCGAGGTCG TGGTCATGCC CGAGTTCCCC GCCGCGCGCG GCGGGTTCGA CGACGAGCCC GAGTACGACC CGGCCGGCTA CGACATGCAG ACGATGCTGC CCGGCTCCAG CGGCTACCAG CCCCCGCGGC CCACCGCCCC GACCCGCGGC CAGGGCGGCG GGCGCGGCTC GTCGTCGCCG ACCGGGCCGG CGGCCGGCGG CGGCCGTGGC GGCAGCGGCT ACGACCCGGC ACGGACGCCG TCCGGCTCGA CGAGCCTGGA GCAGGAGCAC GAGCGCCGGA CGACCTACCG GCTCCGGCAG GGCACGATGT CGCTGGGCCG GGCCCGCGAC AACGACATCG TCATCACCGA CCTGTTGGCC TCCCGCCGGC ACGCCGAGCT CTACATCAAC CGCAACGGGC TGCAGATCGC CGACCTCGAC TCGGCCAACG GCGTCTTCGT CAACGGGCGC CGCATCAGCC GGGCGAACGT GAGCCAGGGC GACGTGATCG CCATCGGCCA CCACGTCTTC CAGCTCGAGG GCGAGCTGCT CGTCGAGTAC CTCGACTCCG GCGACGTCAG CTTCGAGGCC GACGCGCTCA ACGTCTGGGC CGGCGAGAAG CAGCTCATGC ACGACATGAC CTTCAAGCTT CCCGGGCGCG CGCTGCTCGG CGTGGTCGGC CCGTCCGGTG CGGGCAAGTC GACCCTGCTC AACGCGCTGA CCGGGTTCCG CCCGGCGGAC AAGGGCAACG TTCGCTACGC CGGCCGGGAC ATGTACTCCG AGTACGACGA GCTGCGCCGC CGGATCGGCT ACGTGCCGCA GGAGGACCTG CTGCACACGT CGCTCACCGT CCGCAGGGCG CTCGAGTTCG GTGCGGAGCT GCGGTTCCCG CCGGACACCA CGAAGGCCGA GCGCCGCCAG CGGGTCGACG AGGTCCTCGC CGAGCTGGGC CTGACCGCCC ACGCGAACAC CCAGGTGTCG CGGCTGTCCG GTGGTCAGCG TAAGCGGACC TCGGTCGCCC TGGAGCTGCT GACCAGGCCG ACCCTGCTCT ACTTGGACGA GCCGACGTCC GGTCTCGACC CGGGCATGGA CAAGAACGTC ATGGAGTCGC TGCGCAAGCT GGCGGACGAC GGCCGTACGG TCGTCGTCGT CACGCACAGC GTTGCCCAGC TCGACCTCTG TGACTACGTG CTGGTCCTCG CGCCCGGTGG CTACGTGGCC TACTTCGGCC CGCCCGGCGA CGCCCTGCCC TTCTTCGGCG CGAAGGACTA CCCGGACGTC TTCCTCACCC TCGAGGCGAC CCCGGGTGCC GAGTCGGCGG CCCGGTTCAG GCAGTCGCGG TACTACGTCC CGGCGTCGAT CACCGCGCCG TCGGCGCGGC CGGCGCCCGA GGACCTGCCG TCCATCCGGC AGCAGTCGGT CGTCTCCCAG CTCGTCACGC TGAGTCGACG GACGATGGCC GTCGTCGCCT CCGACAAGTC CTACCTACGC CTGATCATCG CTTTCCCGTT CCTTCTCGGG GCGATCCCAC GAGCAATCCC CGGGGATCTG GTGGTGCAAG CGGACGGGCC CAACAGAGAC GCCCCGACGG TCCTACTGGT CGTAACACTG TGTGCCTGTT TCATGGGCAT GTCGAACTCG GTACGAGAAA TCGTCAAGGA GAGACCGATC TATCGCCGAG AACGGGCGAT CGGCCTATCC CGGACGGCTT ATATCGGCTC GAAGGTCCTG GTTCTGACCC TGGTCACGAC CCTGCAGGCC CTGGTGTTCA CGACGATCGC CCTGGCCGGC CGCAAGATGG GTGAGGGGCT GTTCGGCTTC CCCTTCCTCG AGGCCGCGAT CGCCGTGATC GCGCTGTCGC TCGCCTCGGC CATGCTCGGC CTGGTCATCT CCGCGCTGGT CGACAACGCG GACAAGACCA TGCCGCTGCT GGTGCTCATC ACCATGGCCC AGCTGGTCTT CTCCGGCGGT CTGGTTCCCG CGGAGGGGAC GGCCGGCCTC GAGCAGGCCA GCTGGATCGC ACCGGCCCGA TGGGGCTTCG CCGCCCTCGC CTCGGTGATC GACCTGAACA AGATCTCCGG CTTCGGCACT CCGATCAATC CGGACTTCCC AGCCGATCCG CTGTACGCCT TCACGAGCAG CCAGCTCCTG TTCGACCTGG GCGGTGCCCT CGCGGTGGGC ACCGTCTGCG TCATCATCAC CTCGCTGCTG GTGCGGCGGA TGGACCCGAA GACGTCGAAG CGCCGCCCGG CCGCTCCCGC CCGCTAG
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Protein sequence | MQTTYLRVVT EAGAATVPAG EQFIIGRART ADYVIADSRV SRRHLLVEQT GSGWSVRDIS SNGTWVDGQR MPESVSVQGE VRFRLGTPSG PEVVVMPEFP AARGGFDDEP EYDPAGYDMQ TMLPGSSGYQ PPRPTAPTRG QGGGRGSSSP TGPAAGGGRG GSGYDPARTP SGSTSLEQEH ERRTTYRLRQ GTMSLGRARD NDIVITDLLA SRRHAELYIN RNGLQIADLD SANGVFVNGR RISRANVSQG DVIAIGHHVF QLEGELLVEY LDSGDVSFEA DALNVWAGEK QLMHDMTFKL PGRALLGVVG PSGAGKSTLL NALTGFRPAD KGNVRYAGRD MYSEYDELRR RIGYVPQEDL LHTSLTVRRA LEFGAELRFP PDTTKAERRQ RVDEVLAELG LTAHANTQVS RLSGGQRKRT SVALELLTRP TLLYLDEPTS GLDPGMDKNV MESLRKLADD GRTVVVVTHS VAQLDLCDYV LVLAPGGYVA YFGPPGDALP FFGAKDYPDV FLTLEATPGA ESAARFRQSR YYVPASITAP SARPAPEDLP SIRQQSVVSQ LVTLSRRTMA VVASDKSYLR LIIAFPFLLG AIPRAIPGDL VVQADGPNRD APTVLLVVTL CACFMGMSNS VREIVKERPI YRRERAIGLS RTAYIGSKVL VLTLVTTLQA LVFTTIALAG RKMGEGLFGF PFLEAAIAVI ALSLASAMLG LVISALVDNA DKTMPLLVLI TMAQLVFSGG LVPAEGTAGL EQASWIAPAR WGFAALASVI DLNKISGFGT PINPDFPADP LYAFTSSQLL FDLGGALAVG TVCVIITSLL VRRMDPKTSK RRPAAPAR
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