Gene Franean1_5592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_5592 
Symbol 
ID5673920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp6779431 
End bp6781596 
Gene Length2166 bp 
Protein Length721 aa 
Translation table11 
GC content72% 
IMG OID641244446 
Productserine/threonine protein kinase 
Protein accessionYP_001509850 
Protein GI158317342 
COG category[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport
[L] Replication, recombination and repair
[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0515] Serine/threonine protein kinase
[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.294025 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCGG ATGCCGGTGT GACGGCGAGG ACCGTTCCGC TCGGCGCGGA CGATCCCCGT 
GAACTCGGTT CGTACCAGTT GCTGAGCAAA CTCGGCCAGG GCGGCATGGG CACGGTCTAC
CTGGGCAAGT CGCAGCAGGG CCGCTATGTC GCGATCAAGG TGATCCGCGC CGACGTCGCC
GACGACGCCG AGTTCCGCGC CCGCTTCCGG CTCGAGGCCG AGACCGCCCG CCGGGTCGCC
CGGGTCTGCA CCGCGGAGGT GCTCGACGCC GACCCGGACG CCCACCAGCC CTACCTGGTC
ACCGAGTTCA TCGAGGGCGA GACCCTCTCG CGTTTCGTCG CCCGCAACGG CCCGCTCGCC
GACGCCAACC TCGAGCAGCT CGCCGTCGGC GTGGCCGCGG CGCTGACCGC GATCCACCGG
GCCGGCATCG TGCACCGCGA TCTCAAGCCG TCGAACGTCG TGCTCTCACC GTTCGGGCCG
CGCGTCATCG ACTTCGGCAT CGCCCGCGCG CTGGACGCCG CCACGAACCT CACCGGCGAC
CTCCAGCAGC TCGGCACCCC CGCCTTCATG TCCCCCGAGC AGATCGAGGG CGGAGCCGTC
ACCCCGGCCG TCGACATCTG GGCGTGGGGC GGTGTGGTGA CCTACGCCGC CACCGGGCGC
TACCCGTTCG GGGACGGCAA CGCGCAGGTG CTGCTCTACC GGGCGTTGCA CGAGGAGCCG
CGGCTCGACG GCGTCGACCC GGCGCTGCAC CCCATCGTCT GGCACGCGAT GCGCAAGAAC
CCGACCACCC GGCCGACCGC GCAGCAGCTC ATGCTCCGCC TGCTCGGCGA TTCCGGCGAG
GATGCCGACG CCACGATCGA CCCTCGCGAG GTCACCAACG TCCTGCAGGG CTGGAACCTG
CCCGTACCCG GCAGCGGCCA GGGGGACGAC GGCCCGACGA TGGTCACCGC GGCCGGGACC
CAGGGCCCCG CCGGCTACAG CAGCACCGAG GCCTCCACCA GGCTCCCGAC CGGCGTCGGC
GGCCGACCGG GCACCCAGGG CGGCTTCCAC CCCCAGGCAG GCGGCCCGAC GCCTCCTGCG
CAGGGCGGCG GCACTCCGGG TACGGGCGGC ACGGGCGGCG CGCCGGACAA GAAGCGCCGG
ACGCCCGTAA TCGTCGGCGC CGCGGCGGCG GTCGCGGCGG TGGTCGTCGC CGCGACCCTG
ATCGCGACCG GCGGCGGCGA CGACAGCGAC GACAGCTCCA CCGCGTCCAG CGGGTCAGCC
CCCGCCAGCG GCGGGGCCGC GTCCGGGATT CCGCAGGCGG CAACCCCGCT CGACCTCGAC
ACGATGGTCT TCGCCAGCGA CCAGAACGGC AACTACGACC TGTTCACAGG CCGGGTTCCC
GCGCAGGGGG AACTCGCGGA CATCAAGCCG ATCACCACCG CGGCTGATGA CGACATGCTG
CCCTCGATCA GCAAGGATCG CCGGACTGTC GTCTTCTTCC GCAAGGGCTC GCCCAATGCC
CTCTACGCGG TGGCTGCGGA CGGTTCGGGG TCCCCGGTGA AGTTGTTCAC CAGCGGCCCC
GCGGCGAAGC TGACGATCGC CGACGACGCC CGACCGTCGC TGTCCCCGGA CGGCAAGTTC
CTCGTCGTGC GGTCGACGAC CGATGAGTCC GGATTCCCGA ACCCGGGTCT GTATGTGGTC
TCGCTCGATG GCTCTGGGTT GTTCCGCCTC GGCGCCAAGC CCCAGGCGAC CGACCCGGCC
TGGTCGCCGA GCGGTGAGCT CATCGCCTAC TGGTCGTCCG AGACGGAGAG CGACCGCGGC
TTCATCGTGA CGATCCCGGC GAGGCCTGAC TCCCAGCCGA CACCGATCAC CAACGGCCAG
GGAAACCGAG ACGCGGACCC GACCTTCTCA CCGGACGGAA AGCGGATCGC CTTCAGCCGC
GAGGTCGACG GTGACCTTGA GATCTACCAG ATGAACACCG ACGGCTCGGC AGTGGAGCGT
GTCACCGCCG AGCCGGGCCG GGACCAGGAT CCGGCCTACT CACCCGACGG AAAGCTCCTG
AGTTTCACCG GCGAGCGGGG CACGCCGCTC CGCCGGATCT ACCTCACGGA CCCGGCGGAC
ACGACCGCGG CGGACCGTCT CCTCACCAGC ACCGCAGGCT TCCACATCCG CTGGGCAAGC
GGCTGA
 
Protein sequence
MSSDAGVTAR TVPLGADDPR ELGSYQLLSK LGQGGMGTVY LGKSQQGRYV AIKVIRADVA 
DDAEFRARFR LEAETARRVA RVCTAEVLDA DPDAHQPYLV TEFIEGETLS RFVARNGPLA
DANLEQLAVG VAAALTAIHR AGIVHRDLKP SNVVLSPFGP RVIDFGIARA LDAATNLTGD
LQQLGTPAFM SPEQIEGGAV TPAVDIWAWG GVVTYAATGR YPFGDGNAQV LLYRALHEEP
RLDGVDPALH PIVWHAMRKN PTTRPTAQQL MLRLLGDSGE DADATIDPRE VTNVLQGWNL
PVPGSGQGDD GPTMVTAAGT QGPAGYSSTE ASTRLPTGVG GRPGTQGGFH PQAGGPTPPA
QGGGTPGTGG TGGAPDKKRR TPVIVGAAAA VAAVVVAATL IATGGGDDSD DSSTASSGSA
PASGGAASGI PQAATPLDLD TMVFASDQNG NYDLFTGRVP AQGELADIKP ITTAADDDML
PSISKDRRTV VFFRKGSPNA LYAVAADGSG SPVKLFTSGP AAKLTIADDA RPSLSPDGKF
LVVRSTTDES GFPNPGLYVV SLDGSGLFRL GAKPQATDPA WSPSGELIAY WSSETESDRG
FIVTIPARPD SQPTPITNGQ GNRDADPTFS PDGKRIAFSR EVDGDLEIYQ MNTDGSAVER
VTAEPGRDQD PAYSPDGKLL SFTGERGTPL RRIYLTDPAD TTAADRLLTS TAGFHIRWAS
G