| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5550 |
|---|
| Symbol | |
|---|
| ID | 5673880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6720875 |
|---|
| End bp | 6722932 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641244406 |
|---|
| Product | prolyl oligopeptidase |
|---|
| Protein accession | YP_001509810 |
|---|
| Protein GI | 158317302 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1505] Serine proteases of the peptidase family S9A |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.11141 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACG ATGATCCGCA CTGCTGGCTT GAGGACGTCG CCGGGGAGGC CGCCCTCGCC
TGGGTGAGGG AACACAACGC CGAGACGTTC GCAGAGCTCA CCCAGTCGGC CGAGTTCGCC
GGGCTGCGCG CGGAGATCCG CGAGGTGCTC GACTCGGATG ACCAGATTCC CTACCCGGTC
ACGAGGGGCG AGTACCTCTA CAACTTCTGG CGCGACGCGG GTCATCCGCG TGGCCTGTGG
CGACGCACCT CGCTGGCGTC GTATCGCGAT GCCAGCCCGG ACTGGGAAGT CGTGCTCGAC
GTCGACGCGC TCGCCGCCCG CGAGGGCGAG AACTGGGTGT GGCACGGCGC GCGGGTGCTG
CGACCCGAAT ACCGGCTGGC TTTGGTCGAG CTGTCCCGTG GCGGCGCGGA CGCCTCCGTC
ATCCGTGAGT TCGACCTGGT CACGAAGTCC TTCGTGGAGG ACGGCTTCTT CCTGCCCGAA
GCCAAAAGCT CGGTCGGTTG GCTCGATGAA GACCGGATCT ATGTCGGTAC CGATTTCGGC
GAAGGATCGT TGACCACTTC CGGCTACCCC CGCGTGATCC GAGAATGGCG GCGCGGCACT
CCGCTCGACG ATGCCGTCAC AGTCTTCGAA GGCGAGGTGG ATGACGTCTC GGTCGACGCC
TACCACGACC CGACCGAGGG TTTCGTGCGC GACTTCGTCG ACCGAAGTAT CGACTTCTAC
CACACCGAGA CGTTCCTGCG TATCCCGACG GGGCTGGTCC GCATCGACGT CCCGGACGAC
GCGCACACCT CGGTTCACCG GGAGTGGCTG CTCATCACCA CCCGGTCGGA GTGGGCTGTC
GACGAGAAAG TCTATCCGGC GGGCGCCCTG CTCGCCGCCG ACTTCGAAGC ATTTCTCGCC
GGACGACGAG AGCTCGAGCT CCTCTTCGAG CCGGACAAGC ACACCTCGCT CGCGTACCAC
GCGTGGACTC GCAATCATCT CATCGTCGCC ACTTTGCGGG ACGTGAAAAG CCAGTTCACC
GTGCTCACGC CGACAGCCTC GGGCTGGACG AGGGCGCCGC TGGCCGACCT CCCGGACACC
GGCTCCGCCT ACATCAGCGA CACCAGCCCC GACGTCGACG ACGAATACTA CCTCGGTGCC
AGCGGCTACA CCCAGCCAGC GACCTTGTAC CGCGGCGAGA TCGGCGTGGA GCCCGAGATC
CTCAAGCAGG CACCGGCGTT CTTCCCGACC GACGGCCGCA CCGTCAGCCA GTATTTCGCC
GTGTCCGACG ACGGCACCCG CGTCCCCTAT TTCGTCGTCG GTACCGGAAA ACCCGGGCCG
ACGCTGCTCT ACGGGTACGG CGGCTTCGAG GTCTCGCTTA CCCCCAGCTA CAGCGGTACT
GTCGGCCGGG CCTGGCTGGC GCGCGGCGGC ACCTATGTCG TCGCCAACAT CCGCGGTGGC
GGCGAATACG GCCCGGACTG GCATCAGTCA GCCATCCGCG AGAACCGGCT GCGTGCCTAC
GAGGATTTCG CCGCCGTGGC CGGCGACCTC GTCGGCCGGG GGATCACGAC GCCGGCCCAG
CTCGGCATCG AGGGCGGTTC CAACGGCGGG CTGCTCATGG GCGTCATGCT CACCCGCTAC
CCGGAGCTGT TCGGAGCCGT CGTCTGCTCG GTGCCGCTGC TTGACATGCG CCGCTACCAC
CAGCTGCTGG CCGGAGCCTC GTGGATGGCC GAGTACGGCG ACCCTGACGA TCCAGCCGAC
TGGGCGTTCA TCAAGGAATA CTCGCCGTAC CAGAATGTCC GGCCCGGCCG TCGTTACCCG
CCGACGTTCA TCACCACGTC AACCCGCGAC GACCGCGTCC ACCCCGGGCA CGCCCGCAAG
ATGGTCGCGC GGCTGCGCGA ACTCGGCTAC GCCATCCGCT ACTACGAGAA CATCGAAGGC
GGTCACAGCG GCGCCGCCGA CAACGAGCAG CTTGCCCACA AATCAGCCCT GATCTACGAG
TTCCTCTGGC GCACCCTCGG CACCGGTGCG CTGTCAGACG GAGACCGTCC TGCCGCCGGG
GCCGGTCGGA CCGAGTGA
|
|---|
| Protein sequence | MADDDPHCWL EDVAGEAALA WVREHNAETF AELTQSAEFA GLRAEIREVL DSDDQIPYPV
TRGEYLYNFW RDAGHPRGLW RRTSLASYRD ASPDWEVVLD VDALAAREGE NWVWHGARVL
RPEYRLALVE LSRGGADASV IREFDLVTKS FVEDGFFLPE AKSSVGWLDE DRIYVGTDFG
EGSLTTSGYP RVIREWRRGT PLDDAVTVFE GEVDDVSVDA YHDPTEGFVR DFVDRSIDFY
HTETFLRIPT GLVRIDVPDD AHTSVHREWL LITTRSEWAV DEKVYPAGAL LAADFEAFLA
GRRELELLFE PDKHTSLAYH AWTRNHLIVA TLRDVKSQFT VLTPTASGWT RAPLADLPDT
GSAYISDTSP DVDDEYYLGA SGYTQPATLY RGEIGVEPEI LKQAPAFFPT DGRTVSQYFA
VSDDGTRVPY FVVGTGKPGP TLLYGYGGFE VSLTPSYSGT VGRAWLARGG TYVVANIRGG
GEYGPDWHQS AIRENRLRAY EDFAAVAGDL VGRGITTPAQ LGIEGGSNGG LLMGVMLTRY
PELFGAVVCS VPLLDMRRYH QLLAGASWMA EYGDPDDPAD WAFIKEYSPY QNVRPGRRYP
PTFITTSTRD DRVHPGHARK MVARLRELGY AIRYYENIEG GHSGAADNEQ LAHKSALIYE
FLWRTLGTGA LSDGDRPAAG AGRTE
|
|---|
| |