| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5508 |
|---|
| Symbol | |
|---|
| ID | 5673839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6672688 |
|---|
| End bp | 6675195 |
|---|
| Gene Length | 2508 bp |
|---|
| Protein Length | 835 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641244363 |
|---|
| Product | ATP-dependent protease La |
|---|
| Protein accession | YP_001509769 |
|---|
| Protein GI | 158317261 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0466] ATP-dependent Lon protease, bacterial type |
|---|
| TIGRFAM ID | [TIGR00763] ATP-dependent protease La |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.528904 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACACA CCAGGCTCCT CCCGCTGCTG CCGCTGGACG ACGCGGTCGT CCTGCCCGGC
ATGGTGGTTC CGCTCGACCT GTCGGACGCC GGGACCCGCG CCGCCGTGGA CGCGGCCCGC
GGCGGCAGGC CCGACTCCAC ACCCGACGCC AGGGCGCCGG GCATCTCCAG CCGCTCCTTC
CAGCGCACCG CCGAGATCCT GCTCGTCCCC CGGGTGGACG GCGACCTCGC CGACATGGGC
GTCCTCGCCG TCGTCGACCA GATCGGCCGG CTGCCGAACG GCGGGACGGC CGCGCTCGTG
CGGGCCGTGT CCCGCGCCCG GGTCGGCACC GCCCCCACGC CGCCCGGCGC CGCCGACGCC
GGTGTCGTGT GGGCGGAGGC GACCCCTGTC GAGCCGGTCC TCCCGGCCGG CTTCACCGGC
ACGATCAGCG CGACGGCGAC CGCGGGCGCG CCGGGCGCCA CCGGCGACCC CGACGGCCCG
ACCGCCCGGC TGGTCGAGCT CGCCCGCGAG TACCGCACGC TGGTGACCGG GGTGCTGCGC
GCCCGCGGGG TCGGCCAGGT CGCCGACACC GTCGAGGCGA TCGAGAACCC CGACACGCTG
GCCGACACCG CCGGCTACTC GTCCTACCTG TCGACCGCGC AGAAGCTGGA GCTGCTGCGC
ACCGTCGACG TGACCGCCCG GCTGGAGCTG CTCGTCCCGT GGACTCGGGA GCACGCCGCC
GAGGTCGACG TGGCCGAGAC CATCCGGCGC GACGTCCAGG AGGGCGTCGA CCGCCAGCAG
CGGGAGTTCC TGCTGCGCCG TCAGCTGGAG GCCGTCCGCA AGGAACTGGC CGAGCTGGAC
GGGTCACCCG CGTCCTCCGA ACAGGAGGAC TACCGGGCCC GGGTCGAGGC CGCCGACCTG
CCGGAGAAGG TCCGCGCCGC GGCGCTCAAG GAGGTCGACA AGCTGGAGCG GACGGCCGAG
TCCTCCCCCG AGGTCGGTTG GATCCGCACC TGGCTGGACA CCGTCCTGGA GCTGCCGTGG
AACGAGCACG CCGAGGACAC CTACGACATC GCCTCGGCGC GGGCCGTGCT GGACGCCGAC
CACGCCGGGC TCAGCGACGT CAAGGACCGG ATCGTCGAGT ACCTGGCGGT CCGCCGCCGG
CGGGCCGACG CCGGGCTCGG GGTCGTCGGT GGGCGCCGCA GCGGCGCGGT GCTCGCGCTT
GCCGGGCCGC CCGGGGTCGG CAAGACCTCG CTGGGCGAGT CCGTGGCCCG CGCCATGGGC
CGCCGGTTCG CCCGGGTGGC GCTCGGCGGC GTCCGCGACG AGGCGGAGAT CCGCGGCCAC
CGGCGCACCT ACGTCGGTGC GCAGCCCGGT CGCATCGTGC GGGCGATCCG CGAGGCCGGC
TCGATGAACC CGGTGATCCT GCTCGACGAG GTCGACAAGG TCGGCTCCGA CTACCGCGGG
GACCCGACGG CGGCGCTGCT CGAGGTGCTG GACCCGGCGC AGAACCACAC CTTCCGCGAC
CACTACCTGG AGGTCGAGCT CGACCTGTCG GACGTGTTGT TCCTGGCCAC CGCGAACGTG
CTGGAGTCCA TCCCGGCGCC GCTGCTGGAC CGGATGGAGC TGATCCTGCT CGACGGCTAC
ACCGAGGAGG AGAAGGTCAC CATCGCCCGC GACCACCTGC TCCCGCGCCA GCTCGAGCGG
GCCGGGCTGA CCCCCGACGA CGTCACCGTG GACGACGCGG CGCTGCGGCT GCTGGCCGGC
GAGTACACCC GCGAGGCCGG CGTGCGTGAC CTGGAGCGGG CGACCGCCCG GGTGCTGCGC
AAGGTCGTCG CGAAGGTCGC ACTGGACGAG ACCGCCCTGC CGGTCACGAT CGGCGCCGGC
GATCTGGCCG GATACCTCGG ACGGCCGCGG CACACCCCGG AGTCGGCGGA GCGCACCGCG
CTGCCGGGGG TGGCGACCGG GCTCGCGGTC ACAGGGGCCG GCGGGGACGT CCTGTTCGTC
GAGGCGTCAC TGGCCGACCC GGAGACCGGG GCCAGCGGAG TGACGCTGAC CGGGCAGCTC
GGCGACGTCA TGAAGGAGTC GGCGCAGATC GCGCTGTCCT ACCTGCGCTC GCGCGGGGTG
GAGCTCGAAC TGCCGGTCGG CGACCTGCGT GACCGCGGGG TGCACATCCA CGTCCCGGCG
GGCGCGGTGC CCAAGGACGG GCCGAGCGCC GGGGTCACGA TGACCACCGC GCTGGCATCC
CTGCTCTCCG GGCGCCCGGT GCGCGCGGAC GTGGCGATGA CCGGCGAGGT CTCGCTGACC
GGTCGGGTGC TACCCATAGG TGGGGTCAAG CAGAAGTTGC TCGCCGCGCA CCGCGCCGGC
ATCGCAACGG TGCTCCTGCC GGCGCGCAAC GGCCCGGACC TTGACGACGT CCCGGCAGCG
GTCCGCGAGG CGCTGACCGT GCACCTGGTT GCGGACGTCC GCGAAGTGCT TGAGCTGGCG
CTGGAACCGG CCTTCGACAC GACGCACACC CACGCCGTGG CGGCCTGA
|
|---|
| Protein sequence | MSHTRLLPLL PLDDAVVLPG MVVPLDLSDA GTRAAVDAAR GGRPDSTPDA RAPGISSRSF
QRTAEILLVP RVDGDLADMG VLAVVDQIGR LPNGGTAALV RAVSRARVGT APTPPGAADA
GVVWAEATPV EPVLPAGFTG TISATATAGA PGATGDPDGP TARLVELARE YRTLVTGVLR
ARGVGQVADT VEAIENPDTL ADTAGYSSYL STAQKLELLR TVDVTARLEL LVPWTREHAA
EVDVAETIRR DVQEGVDRQQ REFLLRRQLE AVRKELAELD GSPASSEQED YRARVEAADL
PEKVRAAALK EVDKLERTAE SSPEVGWIRT WLDTVLELPW NEHAEDTYDI ASARAVLDAD
HAGLSDVKDR IVEYLAVRRR RADAGLGVVG GRRSGAVLAL AGPPGVGKTS LGESVARAMG
RRFARVALGG VRDEAEIRGH RRTYVGAQPG RIVRAIREAG SMNPVILLDE VDKVGSDYRG
DPTAALLEVL DPAQNHTFRD HYLEVELDLS DVLFLATANV LESIPAPLLD RMELILLDGY
TEEEKVTIAR DHLLPRQLER AGLTPDDVTV DDAALRLLAG EYTREAGVRD LERATARVLR
KVVAKVALDE TALPVTIGAG DLAGYLGRPR HTPESAERTA LPGVATGLAV TGAGGDVLFV
EASLADPETG ASGVTLTGQL GDVMKESAQI ALSYLRSRGV ELELPVGDLR DRGVHIHVPA
GAVPKDGPSA GVTMTTALAS LLSGRPVRAD VAMTGEVSLT GRVLPIGGVK QKLLAAHRAG
IATVLLPARN GPDLDDVPAA VREALTVHLV ADVREVLELA LEPAFDTTHT HAVAA
|
|---|
| |