| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5374 |
|---|
| Symbol | |
|---|
| ID | 5673708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6478539 |
|---|
| End bp | 6479984 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641244232 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001509638 |
|---|
| Protein GI | 158317130 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.558764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAAAT CTGCCCGTAG CGCCCTGACG CTGCTCGCCG GCACCCAGTT CCTCCTTATT
CTGGACACGG CGATCATAAA TGTCGCGGCG CCGTCGATCG GGGACGAGTT CGACGTCTCG
GCGGCGACTC TGTCCTGGGT GGCCAACGCC TATCTGGTGA CGTTCGGCGG GCTGTTGCTG
CTCAGTGGTC GTCTGGCGGA CCTGTTCGGG CGCAGGCGGC TGTTCCTCAC AGGTCTGGCC
GTCCTGGTCG CCGCGTCGCT GACCGGCGCG GTGGCGCAGA CGGCCTCGTG GCTGATCGCC
GCCCGTGCGG TGCAGGGTGC CGGTGCGGCT CTGGCGGCGG CCGCGGCGTT CGCCCTGCTG
CTCAGCCTGT TCCCAGACGG CCCCGACCGT CATCGGGCGC TGGGCGTGTT CGCGGCGATG
GCCGGCGCGG GCGGCGCCGC GGGAACCGTG CTCGGCGGCG TGCTCACGAG CTGGTTGACC
TGGCGGTCCA CGTTCGGGTT GAACGTGGTC GCCGGCCTCG TGCTCGTCGG GTCGGCCCTT
CGGGCGCTGG CGCCGGACAC GCGTCCGTCG GCACGCCTCG GCTTCGACCT CGGTGGCGCG
CTGTCCGTCA CCTCGGGGCT CGCGCTGCTC GCCTACAGCC TGGTGAACAC GGGGGTGGCC
GGCTGGATCT CGCCGCGGAC CCTCGTACCC GGCGCGACGG CGGTGGTTCT CCTGGCGGTC
TTCGTCTGGC TGGAGGGCAG GGTGCGCGTT CCCCTGGTTC CGGCCGCGGT CGTGCGCAGG
CCGGTCCTAC GCCGGGCGAA CCTCCTCTCT GCGCTCGGGC AGGTCGTGCT CTTTCCGATG
TTCTTCCTCG TCAGTGTGTA TCTGCAGGAT GTTCTCGGTT ACTCACCGGT CGCGGGCGGC
AGCGCGCTGC TCCCGTTGTG CGTCGTGGTC ATTCTGGTGG CTTCCAACGC GGACCGGCTG
ATCGGCGGCC TCGGGCTCCG GCCGGCGATG ACCGCGGGCT ATGTGCTCGT GGCCGTCGGC
ATGGCGTGGC TGTCGCTGCT GTCTCCCGAT GGCTCGTTCA CCGGGGACAT CCTCCTGCCC
AGCCTGATCC TCGGGGTCGG CCTTCCGCTG GTTGCCATCA CCACGAACGT CGCGGCGACC
GCGGACGCCG GGCCGGAGGA GATCGGCCTC GCCTCCGGGC TGATCAACAC CAGCCAGCAG
TTCGGCTCGG TCATCGGTCT GGCCGTGCTG AGCGGTATCG CCAGCGCGCG CGTCTCCGCC
GAGGGCGGTC CGGACGATCC CGCGGCGCTC ACCAGTGGAT TCGCCGTCGC GTTCATCGTC
GCCTCCGCCA TCGCGCTGCT GTCCGCCCTC TACGCGGCGG TGCCACGGAC GGCGAGACCA
CAGCAGGAGC CGACCTGGGA AAGGCCACCG GTGTCGATGG CCGCACCAGG CGACAGGGAG
AGCTGA
|
|---|
| Protein sequence | MKKSARSALT LLAGTQFLLI LDTAIINVAA PSIGDEFDVS AATLSWVANA YLVTFGGLLL
LSGRLADLFG RRRLFLTGLA VLVAASLTGA VAQTASWLIA ARAVQGAGAA LAAAAAFALL
LSLFPDGPDR HRALGVFAAM AGAGGAAGTV LGGVLTSWLT WRSTFGLNVV AGLVLVGSAL
RALAPDTRPS ARLGFDLGGA LSVTSGLALL AYSLVNTGVA GWISPRTLVP GATAVVLLAV
FVWLEGRVRV PLVPAAVVRR PVLRRANLLS ALGQVVLFPM FFLVSVYLQD VLGYSPVAGG
SALLPLCVVV ILVASNADRL IGGLGLRPAM TAGYVLVAVG MAWLSLLSPD GSFTGDILLP
SLILGVGLPL VAITTNVAAT ADAGPEEIGL ASGLINTSQQ FGSVIGLAVL SGIASARVSA
EGGPDDPAAL TSGFAVAFIV ASAIALLSAL YAAVPRTARP QQEPTWERPP VSMAAPGDRE
S
|
|---|
| |