| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5302 |
|---|
| Symbol | |
|---|
| ID | 5673636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6382350 |
|---|
| End bp | 6383492 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641244159 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001509566 |
|---|
| Protein GI | 158317058 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.157801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.641383 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTTG TGCCTGTGAG CGTGGTCATT CCCGCTTACA ACGAGGCACT TCGTCTTCCG
GCGTCCCTGC CGCGGCTGCT GGCTGTCGTG GGCAAGATCC CCAGGGCTGA GGTGATCGTC
GTCGACGACG GCAGCACCGA TGGCACCGCC GGGGTCGCCG AGGACCTGCT CGAGGGCTTT
CCGAACCACC GTGTGGTACG CCTGCCGTGG AACTGCGGAA AGGGCACCGC GGTAAGGGCG
GGCGTGTCGG CCGCGCATGG CCGGTCGATC GTCTTCATGG ACGCCGACGG GGCCTCCGAC
GTGAACGACC TGCCGTTGCT GCTCGCCGCG CTCGAGCACG CCGAGGTGGC GCTGGGCTCG
CGGCGAATCG GCGACGGAGC CACCCGGACA AGCGGCCGCA GGGCCGGTAG CTGGGCTTTC
AATCAGATTA CGCGTTCACT CGCGGCGCTG GACGTCGCTG ACACGCAGTG TGGCTTCAAG
GCGTTTCGGC ACGCGGAAGC CAAGATTCTT TTCAGTCTCG CGCGCTCCAC CGGCTTCGGA
TTCGACGTCG AGGTGCTCTC GATCGCGCGC TCGGTTGGCT ATCGCATCGC CGAGGTACCC
GTGCGCTGGG AGGAGACGCC CGGCGGCACC TTCCGGATCA CCCGGCACAC CCCCGCGATG
CTCGTCGACG TCGTCCGGGC CCGCCGCTAT CTCAGCCGGG TCGGGCTCCC GCCGGTCAGC
CGTCGCCAGC GGCTGGGCGA GCTCGGTGTC GTGGACGCGT CCGAGCTGCT CGGCCGGCCG
GCCACGCCGC GCGGTGCGGG GGAACCGCAG GGTGCCCCGC CCGGCCAGCT GCCGGTGCCC
GCGGCCCCCA CCCGGCCCGG CACACCGGCC CGGCCGACGG CCCGTACCCG GCCCGGCACA
CCGGCCCGGC CGGTGCCCGC CGCCCGGCCC ACGACCGCCG CCGCTCCCGC CCGGCCCGCG
GCCGTTCCCG CACTGCCCAT GACTCCCGCG CTGCCCGCCG CCCCCGCGCG GCCCCCCGCG
GTGCCCCGCC CCACGCCGCG TCCCGCTCCC GCGGTTCCAG CCGTGAGCGT GGCGCACGGG
ACCGGGCGGT TCACCCCGTC GCCCTCCCGC GGTGAGATCC CCGGTCCCGC GCCCGCACCG
TGA
|
|---|
| Protein sequence | MDLVPVSVVI PAYNEALRLP ASLPRLLAVV GKIPRAEVIV VDDGSTDGTA GVAEDLLEGF
PNHRVVRLPW NCGKGTAVRA GVSAAHGRSI VFMDADGASD VNDLPLLLAA LEHAEVALGS
RRIGDGATRT SGRRAGSWAF NQITRSLAAL DVADTQCGFK AFRHAEAKIL FSLARSTGFG
FDVEVLSIAR SVGYRIAEVP VRWEETPGGT FRITRHTPAM LVDVVRARRY LSRVGLPPVS
RRQRLGELGV VDASELLGRP ATPRGAGEPQ GAPPGQLPVP AAPTRPGTPA RPTARTRPGT
PARPVPAARP TTAAAPARPA AVPALPMTPA LPAAPARPPA VPRPTPRPAP AVPAVSVAHG
TGRFTPSPSR GEIPGPAPAP
|
|---|
| |