| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5277 |
|---|
| Symbol | |
|---|
| ID | 5673611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6349390 |
|---|
| End bp | 6351267 |
|---|
| Gene Length | 1878 bp |
|---|
| Protein Length | 625 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641244134 |
|---|
| Product | methyltransferase type 12 |
|---|
| Protein accession | YP_001509541 |
|---|
| Protein GI | 158317033 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.162959 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGTC GAGCACTGTT GCCGGTCGCC GCATGCGCGG GCGTCGGGAT CAACGGCCTG
CGGCTGCGCG CACGGATGCG GGCACTCGCC GTCATCGCAC CGGCCGACGA GCCGGTACAC
CCCTCGCACG TCTTTCTGCT GGCGGACGGC GTCCGCCTCG ACGAGCTGGC CCGGCGGGCG
GCGAGCGCGC ACGCGCTGCG GGAGGGCCTC ACCGTCCTGG ACCTCGTGCC GGCCGAGCTG
CCCGCGCACG AGCTGCTCGA CCTCGCGCGG CTGGTCGATC CGGCGCGTTA CCGCGCCCAG
CGGCTGGAAC GGGGGCGCGG AGCCTTCCGT GCGCTGCTGG TCGACCGGGA CGTCCTGGAG
CGCACCGGGC TCGACCTGAA GGACCCGAGC CGCGTCGACC TGGTCGCGGC GACGGCGGCC
CTCAAGCTGC TCGCGCCCGC GTCGACGGAT CTGGCGATCC TGCCGGGCCT CACCGCCGCG
GACGGCTTCA CACCCGCGGA CGGCGGGCCG CCGACCGGGT CGGCGGACGG GTCGGACCGG
GTCGCGGTGC AGTTCGCCGC TCGCCCGTGG GAGCCCGGCC AACCGTTCTT CCCGCTCGCC
CGCGACCTCG CGGTGGCCGC CGGAGCCACC GCGGTTCCGG GCTGGGCGCT CGGCGCGGCG
GTGCTGTCGT GGCTGCAGCC GTTGGTCGTC GGAGCCGGGC GCATCCGGGT GCCCGCCGCC
GACCTCGTCC GCAGCCCGCT GACCCGCCGG CGGCCCGCGC TGCGGACCCT CGCGTCGGCG
GTCGGCGGCG CGGTGACGGG CTCGGGCGTG GACCTGCCCA GGCCGGGGCC GCCCGCCCCC
GAGCCCGCCG TGCTGGCCGC GAAGCGGCGT GAGTACGCCG CCGACCTGGC CGCCGGTATC
GACCGGTTCC TGGAGCCGGC CACGACGAGC TGCCCCTGGT GCGGCGGCAC GGACCTCTCG
CTGGCCCTGC GCGGCGCGGA CGCCATCCAG GTCAAGCCGG GGGTGTTCCG GTACGACCGC
TGCGGCGGCT GCGGCCACAT TTTCCAGAAC CCGCGGCTGA CCCTCGACGG CCTCGACTTC
TACTACCGGG ACACCTACTC CGGCCTGGGC TCCGGGCTGA CCGAGGAGCT CTTCCGCCGC
AACACCGACA GCTACCTGGA ACGGGCGCGG ATCGACATAC CCACGCCACG GCGCTGGCTG
GACGTCGGCG GCGGGTTCGG GCACTTCTGC GCCGCCGCGC GCGAGGTGTG GCCGACGACC
TCGTTCGACG GTCTGGACAT CGGCGCGGCC ATCGGCGAGG CGGAGCGCCG GGGCTGGGTC
GACCAGGCCT ACCGGGGACT GCTGCCCGAC CTCGCCGGGA CGCTGAGCGG GCGCTACGAC
GTCGTGAGCA TGTTCCACTA CCTCGAACAC ACCCGGGACC CGCGGGCCGA GCTGCGCGCC
GCCGCCGAGG TCCTCGCCCC GGGCGGCCAC CTGCTCATCG AGGTGCCGAA CGCGCAGAGC
CCGGCCGCCC GGTGGTACGG GACGTACTGG CCGGGCTGGT TCGTGCCGCA GCACCAGCAT
CTCGTCCCGG CCGACAACCT GACGGCCGCC CTCGGCGAGG TCGGCCTCGA GGTGCTGGAC
GTGCGCTTCG GCGAGACGCA CCAGCGCGGG GACGCCCCGG TGGTCTTCTG GGGGATGTGG
CAGCGCGCGA CACCGTCACC GGCCGTCCCG TGGCGCGAGG TCAGCCGGCC CGGCCTGGCC
CGCGGCCGGC GCGCCCTCGT AGGCGCGGCG GTGTTCACCG CGATGCCGGC GGCGATCGTG
TGGGACATGG CGAGCCGGCC GTACCTCACC ACCGGTAGGC GCTCGAACGC CTACCGGATC
CTGGCCCGCC TGCCCTGA
|
|---|
| Protein sequence | MNRRALLPVA ACAGVGINGL RLRARMRALA VIAPADEPVH PSHVFLLADG VRLDELARRA
ASAHALREGL TVLDLVPAEL PAHELLDLAR LVDPARYRAQ RLERGRGAFR ALLVDRDVLE
RTGLDLKDPS RVDLVAATAA LKLLAPASTD LAILPGLTAA DGFTPADGGP PTGSADGSDR
VAVQFAARPW EPGQPFFPLA RDLAVAAGAT AVPGWALGAA VLSWLQPLVV GAGRIRVPAA
DLVRSPLTRR RPALRTLASA VGGAVTGSGV DLPRPGPPAP EPAVLAAKRR EYAADLAAGI
DRFLEPATTS CPWCGGTDLS LALRGADAIQ VKPGVFRYDR CGGCGHIFQN PRLTLDGLDF
YYRDTYSGLG SGLTEELFRR NTDSYLERAR IDIPTPRRWL DVGGGFGHFC AAAREVWPTT
SFDGLDIGAA IGEAERRGWV DQAYRGLLPD LAGTLSGRYD VVSMFHYLEH TRDPRAELRA
AAEVLAPGGH LLIEVPNAQS PAARWYGTYW PGWFVPQHQH LVPADNLTAA LGEVGLEVLD
VRFGETHQRG DAPVVFWGMW QRATPSPAVP WREVSRPGLA RGRRALVGAA VFTAMPAAIV
WDMASRPYLT TGRRSNAYRI LARLP
|
|---|
| |