| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5274 |
|---|
| Symbol | |
|---|
| ID | 5673608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 6343872 |
|---|
| End bp | 6344513 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641244129 |
|---|
| Product | endopeptidase Clp |
|---|
| Protein accession | YP_001509538 |
|---|
| Protein GI | 158317030 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.136114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGACA TCGCCGCCCC TGGCCTGGCT GTCCCGGGCC CGAGTCTCCG CTCGCCGGGA
CAGAATGGCC CCGGCTTCGA CGAGCAGGTC TTCAACCGTC TCCTCCGTGA GCGGATCATC
TTCCTCGGTT CGGTGGTGGA GGACTCGATC GCCAACGCGA TCTGCGCGCA GCTCCTGCTG
CTGAACGCCG AGGACCCCGA GCGGGACATC TTCCTCTACA TCAACTCGCC CGGCGGCTCG
GTCAGCGCCG GCATGGCGAT CTACGACACC ATGCAGTACG TCGAGAATGA CGTCGCCACG
GTTTCGCTGG GGCTCGCCGC GTCGATGGGC CAGTTCCTGC TCTGCGCGGG CGCGCCGGGC
AAGCGTTACT CGCTGCCGCA CGCGCGGATC ATGATGCACC AGCCCTCCGG CGGCATCGGC
GGAACGGCGT CCGACATCGC GATCCAGGCG GAGCAGATGC TCTACACCAA GCGGATGATG
CAGGAGCGCA TCGCGTTCCA CACCGGTCAG CCCGTCGAGC AGATCGAGCG GGACTCCGAC
CGCGACCGCT GGTTCACCGC GGACGAGGCG AAGGACTACG GCTTCGTCGA CCACGTCGTC
CAGCGGGCCC GCCAGGTCCC CAGCGAAGGA CCGGTGAGCT GA
|
|---|
| Protein sequence | MSDIAAPGLA VPGPSLRSPG QNGPGFDEQV FNRLLRERII FLGSVVEDSI ANAICAQLLL
LNAEDPERDI FLYINSPGGS VSAGMAIYDT MQYVENDVAT VSLGLAASMG QFLLCAGAPG
KRYSLPHARI MMHQPSGGIG GTASDIAIQA EQMLYTKRMM QERIAFHTGQ PVEQIERDSD
RDRWFTADEA KDYGFVDHVV QRARQVPSEG PVS
|
|---|
| |