Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_5262 |
Symbol | |
ID | 5673596 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 6325145 |
End bp | 6329428 |
Gene Length | 4284 bp |
Protein Length | 1427 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641244117 |
Product | ribonuclease |
Protein accession | YP_001509526 |
Protein GI | 158317018 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.266118 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.176556 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCCGAAG ATCAGATCAT CGAGGACCAG GCCACGCGCT CCGAGGTAAC GCCCTCCGAG ACCGTGCCCT CCGACAACAC CCTTGCCGAT ACCGCGGCCC CTGCGACGGC GGCTCCCGAG CCGGTGACTC CCGCGACAGC TGTCGCTGAG TCTGCGGCCC CTGAGAGCGT GACCGCCGAG ACCGCTCCGC AACGCCCCAC CCGGCGCCGC CGCGCGGCCG GCAGACCGGC CGGGCCGCCA CCTGAGGAGG CAGGCCCGCC TGCCGCCGCG GCCGATGGCG AGACCGCCGT GGACGCGGCC GATTCCGCCA CTGGCGCCGG TGCCGGTGCC GTGTCCAGCA CTCTCCCCGT GTCCGACGGT GCGGCGCCTG ACGCCGCGGT ACCGCTGGTC GAGGCCGGCG CCGAGCCGGC GCCCGAAGCC GCGCCGGCCA AGCCAGCCCG GCGGGCGAGG ACGACCCGGC CGCGCCGGGC CTCCCGGGAG GTCAGCGAGG CCGTACCCGA CACCACAGCC ACCCCCGCTC CCTCCGACAC CACGTCGCCC GCCGCCGGCT CGTCCGACAC GACGTCGCTC GACACCAGGG CACCTGAGAC CACGTCGTCC GCCACCGCGG CGCCCGAGGC CGGAGCGGAC AACGTCCCCG GCTCGCCCGG GCAGGTCGCG AAGGGCGACG TCACCGCGTC CGATGCGCTC GCTGACACTA CGGCGTCGGG CGAGGCTGCC CCCGCCGTGA CCAAGCCGCG TCGCACCCGT GCTCGTCGGG CGGCCACGAA GGTCGAGCCG GCGGCCGAGA CCGGCACTCC CACGGGTGCG CCGGGCAGCG AATCCGCCGC CTCGGCGTCG TCCAGCGTGG GCGAGCCGGC GGTCGGGCAG ACTCCCGCCG CCTCCGCTCC GGCCCCCGCC GCAGCCCCGG ACTCGGTGGC CGACGCGGCC ACCCCGCCGG CTGTCGCGGC CACCTCGCAG GTGGTAGCGG CCACCTCGCC GGCTCCCGAG CCGGCCATCG ACGAGACCGT CGACCCGCTC GCGGAGCCGG TCGACGAACT GCCGGCGGAC GCCACCGCCG ACGCGGACGC CGGGACCAGC GCTGCCGGGA CTGGCGCCGC CGCGACGGAC GCGCCCGGGG CTCAGCCGGC GGTCGCGTCC TCGCCGGAGC CCGTGATTGC CGCGACGGTG GCGGACACAG CGGCTGTGAC GGGCGCCGGA ACCACCGGAA CCACCGAAGC CACCCCCGCG GCCGGTCCCG AGGCGGTCGC CGGAACGGAG ACCGCCCCCG GTCCCGAGGC GGTCGGTGCG CCCGAGCCCC CGCGGGCGGA GCGCACCTCG CGGCGGCGCA CGCGGGCGGT CGCCCCGACG TGGACCAGCG GCGCCGAGGC CCCCGCCCCC GCGCCGGTGA CCCGGCAGTC GGCCCGTCGC CCGGTGGCGA TGATCACCTT CCAGCAGCCG GAGCCGGCGG TCGTGGACCC GTGGCCCCGC CGCCGTCGTG ACGCTGACGA CGCGCCGGCC GAGCCCGCCG TGACCGGTCG CGGCGGCCTC ACCGGTGCGG GCCTCGACGA CGTGGCCCCG GCCGACGAGA TCGTCGACGC GGCCGACGAC GCGGTGGCGT ACGACACCGC GGAGTTCGGT GAGGCACTGG AGACGGAGAG CAGCGAGCAG GCGTTCGACG GCGGCGAGTA CTCGTCCACC GACGCGGACG GCGACGACGC CGGACCGGGC GGAACCCGCC GCCGCCGCCG CGGCCGCCGT GGTCGTGGCC GGGCCCGCGG CGAAGACGAG ATCTCCGAGA CCAGTGACCT TGCCGAGGAG CAGGTCGACG AGGCCGAGGA GCGCGACGAC CGCGAGCTCG AAGCCGAGCC GGTGGAGCGT GAGCCCAGGT CCTCCCGCCG CCGCTCACGT CGCTCGCCGA CGAGGGAGAC ATTCGACGAG GCGGAGGAGA TTGACTCCGA AGCCGAGCTG GTGGCCGGAG CCGACTCCGG AGCCGACACC GACACCGACA CCGAGTCTGA CGCCGACGAC GGCGCGGACC TCGAGGACGG CGCGGACGAC TCGGCCGAGG ACGGTTCGGA CGATGACCGC GCCGGTGGAT CTCGCCGCCG CCGCCGGCGC CGCCGCCGTT CCGGGACCGG CGCGGAGACC ACGCCGGTCC CCGACGACCC CCCGAACACC GTCGTGCACG TGCGCGAGAC GCGCCGGGAC GACGACCTCG TCCGCGGGGT CAGCGGTTCC ACCCGGCTGG AGGCGAAGCG CCAGCGCCGG CGCGAGGGCC GCGACAGCGG TCGCCGCCGC GCACCCATCG TCACCGAGGC CGAGTTCCTC GCCCGGCGGG AGTCGGTCGA GCGCCGGATG ATCGTCCGGC ACAACGGTGA CCGCACCCAG ATCGCCGTGC TTGAGGACGG CGTCCTGGTC GAGCACTTCG TGACGCGCGC CAGCTCGGCG TCCTACGCGG GCAACGTGTA CCTCGGGCGG GTGCAGAACG TCCTGGCCAG CATGGAGGCG GCGTTCGTCG ACATCGGCAA GGGCCGCAAC GCCGTCCTGT ACGCCGGTGA GGTCAACTAC GACGCCTCGG GCCTCGACGG CCGGCCGCGC AAGATCGAGC AGGTGCTGAA GTCCGGGCAG TCGGTGCTCG TCCAGGTCTC GAAGGACCCG ATCGGGCACA AGGGCGCGCG GCTGACCAGC CAGGTGAGCC TGCCCGGCCG CTACCTCGTG TACGTGCCGG ACGGCCAGAA CGCCGGAATC AGCCGCAAGC TGCCGGACAC CGAGCGCGCC AGGCTGAAGA GCATCCTCAA GAAGATCACT CCGGAGAACG GTGGGGTGAT CGTCCGCACC GCGGCGGAGG GTGCGAGCGA GGCCGAGCTC GAGCGCGACA TCGAGCGCCT CGTCGCGCAG TGGGAGGACA TCCAGCGCAA GGCGCAGAAG GCCAGCGCGC CGTCCCTGCT CTACGGCGAG CCCGACCTGG TGGTGCGGGT CATCCGCGAC ATCTTCAACG AGGACTTCAC CGAGCTGGTC GTCCAGGGGT CGCACGAGGC CGCGACCGTC GAGGGCTACG TCGACACGGT CGCCCCGGAC CTGCGCGACC GCGTCCGCCG CTACGTCGGC ACCGGGGACG TCTTCGCCGA GCACCGGGTG GACGAGCAGC TCGCGAAGGC GCTGGACCGC AAGGTCTGGC TGCCCTCCGG CGGCTCACTG GTCATCGACC GCACCGAGGC GATGACCGTC ATCGACGTCA ACACCGGCAA GTTCACCGGC AAGGGCGGCA ACCTCGAGGA GACGGTCACC AAGAACAACC TCGAGGCCGC GGAGGAGATC GTCCGCCAGC TCCGGCTGCG CGACATCGGT GGCATCATCG TCATCGACTT CATCGACATG GTGCTGGAGA GCAACCGCGA GCTGGTGCTG CGCCGGCTCA CCGAGTGCCT CGGCCGGGAC CGGACCCGCC ACCAGGTCGC CGAGGTGACG AGCCTGGGCC TCGTCCAGAT GACCCGCAAG CGGGTGGGCC AGGGCCTGCT GGAGGCCTAC AGCGAGCCGT GCGCCCACTG CAACGGGCGC GGTGTGCTCG TCCACCTCGA CTCCGCGCAC TCAAGGGACG CGCAGTCGCG GGACGGGGCA CAGCCGAGGG AGGCGGCGTC GTCGGCGAGC CAGCCGGCGG CGGAGGCTCC GGCCCAGGCG GCCGGTACCT CCACGGGCCG CCGCGCACGG CACGCGACAA AGCCCGCTGG TCCAGCCCTC GTGGCTGCCG CGGTCTCGTC GGCCGTGGAC GGGGCGCATG TCTCCTCGGA CGATGCCAGC GGGTCCGTGA ACGGCTCCGC ATCGGCTGAA TCGACTGATT CGTCTGGATC AGTTGGATCG GCTGGGGTGT CGGGGCCGGC GGAGGCGGTG GCTCTTGGTG AACACCCGGC CGCTCAGGCC GGCGCGTCCT TGCTGGACGC CGTCGCACCG CGGGCCGCCC GGATCGCCGT AACGGTTGGA GCCGGAAGCG ATCAGGGCAC TGAGAGTAAC GGCGTCGACA GCAACGGCGT CAGTGGCGGG CCCGGGGCTA ACGGGACCGG GAGTGGCGGG GCCGAGGGCA CCACGGTCGA CGGTGAGTCG CGGCCGGGTT CCGGCGGAAT CCCGGTGTTC GCGAACACCG ACGATCCGGA CAGCGTTCTG CATTCCGGTA CGAACGGTGC GGGCACTCCG GCTGGCGCCG AGAAGCCGGC CCGCGCCCGT CGCCGTCGCG CATCCCGCCC GGTCTCCAAG CCCACGGACA CCGCCCAGCC GATCCCCGTT CCCTCCGAAG CCACCAGCAC CTGA
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Protein sequence | MPEDQIIEDQ ATRSEVTPSE TVPSDNTLAD TAAPATAAPE PVTPATAVAE SAAPESVTAE TAPQRPTRRR RAAGRPAGPP PEEAGPPAAA ADGETAVDAA DSATGAGAGA VSSTLPVSDG AAPDAAVPLV EAGAEPAPEA APAKPARRAR TTRPRRASRE VSEAVPDTTA TPAPSDTTSP AAGSSDTTSL DTRAPETTSS ATAAPEAGAD NVPGSPGQVA KGDVTASDAL ADTTASGEAA PAVTKPRRTR ARRAATKVEP AAETGTPTGA PGSESAASAS SSVGEPAVGQ TPAASAPAPA AAPDSVADAA TPPAVAATSQ VVAATSPAPE PAIDETVDPL AEPVDELPAD ATADADAGTS AAGTGAAATD APGAQPAVAS SPEPVIAATV ADTAAVTGAG TTGTTEATPA AGPEAVAGTE TAPGPEAVGA PEPPRAERTS RRRTRAVAPT WTSGAEAPAP APVTRQSARR PVAMITFQQP EPAVVDPWPR RRRDADDAPA EPAVTGRGGL TGAGLDDVAP ADEIVDAADD AVAYDTAEFG EALETESSEQ AFDGGEYSST DADGDDAGPG GTRRRRRGRR GRGRARGEDE ISETSDLAEE QVDEAEERDD RELEAEPVER EPRSSRRRSR RSPTRETFDE AEEIDSEAEL VAGADSGADT DTDTESDADD GADLEDGADD SAEDGSDDDR AGGSRRRRRR RRRSGTGAET TPVPDDPPNT VVHVRETRRD DDLVRGVSGS TRLEAKRQRR REGRDSGRRR APIVTEAEFL ARRESVERRM IVRHNGDRTQ IAVLEDGVLV EHFVTRASSA SYAGNVYLGR VQNVLASMEA AFVDIGKGRN AVLYAGEVNY DASGLDGRPR KIEQVLKSGQ SVLVQVSKDP IGHKGARLTS QVSLPGRYLV YVPDGQNAGI SRKLPDTERA RLKSILKKIT PENGGVIVRT AAEGASEAEL ERDIERLVAQ WEDIQRKAQK ASAPSLLYGE PDLVVRVIRD IFNEDFTELV VQGSHEAATV EGYVDTVAPD LRDRVRRYVG TGDVFAEHRV DEQLAKALDR KVWLPSGGSL VIDRTEAMTV IDVNTGKFTG KGGNLEETVT KNNLEAAEEI VRQLRLRDIG GIIVIDFIDM VLESNRELVL RRLTECLGRD RTRHQVAEVT SLGLVQMTRK RVGQGLLEAY SEPCAHCNGR GVLVHLDSAH SRDAQSRDGA QPREAASSAS QPAAEAPAQA AGTSTGRRAR HATKPAGPAL VAAAVSSAVD GAHVSSDDAS GSVNGSASAE STDSSGSVGS AGVSGPAEAV ALGEHPAAQA GASLLDAVAP RAARIAVTVG AGSDQGTESN GVDSNGVSGG PGANGTGSGG AEGTTVDGES RPGSGGIPVF ANTDDPDSVL HSGTNGAGTP AGAEKPARAR RRRASRPVSK PTDTAQPIPV PSEATST
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