| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4903 |
|---|
| Symbol | |
|---|
| ID | 5673243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5888510 |
|---|
| End bp | 5889898 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641243758 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001509174 |
|---|
| Protein GI | 158316666 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0308008 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0833293 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAACG CGCCCCATGA TCCCACTGAC GCCCTCGCCG CCGCGGCCGC GGGGGACCCA
CTCGCGGCGA GGACAGGGCG GCCGGCCGTC CCGTCCGCCG CCGAGTCCGA GGTCGTGGAT
CTGTGTCGGG ACCTGCTGCG CTTCGAGTCG GTGAACCGCG GGAACGGCGA CGGCCACGAG
CGGCCCATCG CCGAGTACGT GGCCACCAGG CTGGCCGAGG TCGGGCTGGA GCCGGTGCTG
CTCGAGTCCG CGCCCGGCCG CACGAGCGTG GTGACCAGGG TGGAGGGCAC CGACCCGTCC
CGCTCCCCGC TGCTCATCCA CGGCCACCTG GACGTCGTGC CCGCCGACCC GTCCGAGTGG
CGCGTGCACC CCTTCTCGGG CGAGGAGGCC GACGGCTGCC TGTGGGGGCG CGGCGCCATT
GACATGAAGG ACATGGACGC GATGACGCTC GCCGTCGTGC GCGACATGGT CCGGTCGGGC
CGGCGTCCGC CCCGTGATCT CGTCGTCGCC TTCGTCGCGG ACGAGGAGGC CGGCGGCACC
CTCGGCGCGC GGTGGCTGGT GGACAACCAT CCCGACCACT TCGCCGACTG CACCGAGGCG
ATCAGCGAGG TCGGCGGGTT CTCCTACACC GTCTCGGACG ACCTGCGGCT GTACCTGATC
GAGACGGCGC AGAAGGGCAT CGCCTGGATG AAGCTGACCG TCGCCGGCCG GGCCGGCCAC
GGGTCGATGA TCAGCGAGGA CAATGCGGTG ACCAAGCTGT GCGAGGCGGT CGCCCGGCTC
GGTCGGCACC AGTTCCCGAT CGTGGTGACC CCGACCGTGC GCGTCTTTCT CGACTCGATC
GGCGAGGCGC TGGGCATCGA GCTCCCCGCG GACGACCTGG AGACCACGAT CGCGAAGCTC
GGCCCGATCG CGCGCATGAT CGGGGCGACG ATCCGCAACA CGGCGAACCC CACGCAGCTC
GCCGCCGGAC ACAAGGTCAA CGTGATCCCC GGCGAGGCTG TGGCCTACGT CGACGGGCGC
TACCTGCCTG GGCAGGAGGA GGAGTTCCTG CGCCAGGTCG ACGAGCTGCT CGGGCCGGAG
GTCCGGCGTG AGTGGGTGGT GAACGACCAG GCGCTGGAGA CCGGGTTCGA CGGCCCACTG
GTGGACGCGA TGGCCTCGGC GCTGCGCGCG GAGGACCCGG CCGCCCGGGC CGTCCCGTAC
ATGCTCTCGG GCGGTACCGA CGCGAAGTCG TTCTCCCGGC TCGGCATCCG CTGCTTCGGG
TTCTCCCCGC TGCTGCTCCC GCCGGACCTC GACTTCGCCG GCATGTTCCA CGGCGTGGAC
GAGCGGGTGC CCGTCGACGC CCTGCGGTTC GGGGTCCGCG TCCTGGACCG TTTCCTCGCC
GCCTCCTGA
|
|---|
| Protein sequence | MANAPHDPTD ALAAAAAGDP LAARTGRPAV PSAAESEVVD LCRDLLRFES VNRGNGDGHE
RPIAEYVATR LAEVGLEPVL LESAPGRTSV VTRVEGTDPS RSPLLIHGHL DVVPADPSEW
RVHPFSGEEA DGCLWGRGAI DMKDMDAMTL AVVRDMVRSG RRPPRDLVVA FVADEEAGGT
LGARWLVDNH PDHFADCTEA ISEVGGFSYT VSDDLRLYLI ETAQKGIAWM KLTVAGRAGH
GSMISEDNAV TKLCEAVARL GRHQFPIVVT PTVRVFLDSI GEALGIELPA DDLETTIAKL
GPIARMIGAT IRNTANPTQL AAGHKVNVIP GEAVAYVDGR YLPGQEEEFL RQVDELLGPE
VRREWVVNDQ ALETGFDGPL VDAMASALRA EDPAARAVPY MLSGGTDAKS FSRLGIRCFG
FSPLLLPPDL DFAGMFHGVD ERVPVDALRF GVRVLDRFLA AS
|
|---|
| |