| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4684 |
|---|
| Symbol | |
|---|
| ID | 5673026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5595050 |
|---|
| End bp | 5595721 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641243541 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001508957 |
|---|
| Protein GI | 158316449 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.51425 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCCGTG TCCTTTTGGC CGACGACCAG GCGCTCATCC GCGCCGGTTT CCGTGTCCTC
GTCGAGGCCG CCGCCGACAT CACCGTGGTC GCCGAAGCGG CCGACGGCGC CGAAGCGGTC
CGCCTGGCAC GTGAGACCCG TCCCGACGTC ATCCTGATGG ACATCAGGAT GCCGGGCACC
GACGGCCTGT CCGCCACCCG CGAACTGACC GGCGACCCGA CGCTCAACGA GGTGAAGGTG
CTTGTCCTGA CCACCTTCGA GCTCGACGAG CACGTCTTCG AGGCTCTGCG GGTCGGGGCC
AGCGGCTTCC TCGGCAAAGG GGTGGAACCC GACGAGCTGG TCGCCGCGAT CCGGGTCGTC
GCCCGCGGCG ACGCGCTCCT GTCCCCGCAG GCGACCCGTC ACCTCATCGA GCAGTACCTG
CGGCAGCCGG CCACACCGGC ACCCGCGGTC ACCGCGGGGC TGGATCTGCT CACCAAGCGG
GAGAACGAGA TCGTCAGGCT CATCGCCTAC GGGCTGACGA ACGACGAGAT CGCCGAACAG
CTGTACCTGT CGCCGCTGAC CGTCAAGACA CACGCGAACC GCGCGATGAC CAAGGTAGCG
GCCCGCGACC GCGCCCAGCT CGTCGTGATC GCCTACCAGA CCGGGCTCGC CGAGGCCCCC
AGCAGGAATT GA
|
|---|
| Protein sequence | MIRVLLADDQ ALIRAGFRVL VEAAADITVV AEAADGAEAV RLARETRPDV ILMDIRMPGT
DGLSATRELT GDPTLNEVKV LVLTTFELDE HVFEALRVGA SGFLGKGVEP DELVAAIRVV
ARGDALLSPQ ATRHLIEQYL RQPATPAPAV TAGLDLLTKR ENEIVRLIAY GLTNDEIAEQ
LYLSPLTVKT HANRAMTKVA ARDRAQLVVI AYQTGLAEAP SRN
|
|---|
| |