Gene Franean1_4181 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_4181 
Symbol 
ID5672536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4972105 
End bp4972827 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content73% 
IMG OID641243054 
ProductTetR family transcriptional regulator 
Protein accessionYP_001508471 
Protein GI158315963 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.367396 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.615524 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCACGC TGTGGGTTCT ACTAAGATCA GGTGTCGTGA CGGCATCGGA CGAGGATGAG 
GACGCGCCCC GGTCGGGCGC ATCGGCTCCC CCGCAGCGCA CGCCTCGGGG CACCCTGTCG
AGGGAGGTGC TGCTCGACGC GGCGATGGAG ATCGTGCGCA TCGGCGGGGC CGACGCCTTC
AGCATGCGTG CCCTCGGTGC TCGCCTCGAT GTCGACCCGA CCGCCGTCTA CCGCCACTTC
CGCACCAAGA ACGAGCTGCT GGACGTCCTC GCCGACATCC TGATCGCCGG CGACGAGCCG
CTGCCGTCGA CCGGGGACGC GCGGGCCGAC CTGCGGGCGA GCCTGCACCA GCTACGGCGG
TCACTGCTGC GCCACCCGAC GATGGCGGGT GTGATCCTGC GCCGCCCGCC GGGCGGGCGG
GCGTACTGGG AGCGGGCCAA CCACGCGCTC GGCCTGCTGC GCGGGATGGG CCTGAGCCCC
GAGCAGGCGA CGTCCGCTTA CCAGACGCTG CTGTTCTACA GCCTGGGCCA TGTGTTGTCC
GAGGCGCGCA CGCTGGCCGC CGCGGTCGCG CGGGACCGGC GTCCCAGCGC GCCGACGGCG
ACGTTCAACC CGCCGGCGCA CCAGCTGCCC GACCTGGCGG CGGCGGTGCC GTTCCTGCGG
GCCGACACGG CCGCACAGTT CGACGACGGC CTCGACCTGA TCATGGGGTC GCTGCCAGGG
TGA
 
Protein sequence
MTTLWVLLRS GVVTASDEDE DAPRSGASAP PQRTPRGTLS REVLLDAAME IVRIGGADAF 
SMRALGARLD VDPTAVYRHF RTKNELLDVL ADILIAGDEP LPSTGDARAD LRASLHQLRR
SLLRHPTMAG VILRRPPGGR AYWERANHAL GLLRGMGLSP EQATSAYQTL LFYSLGHVLS
EARTLAAAVA RDRRPSAPTA TFNPPAHQLP DLAAAVPFLR ADTAAQFDDG LDLIMGSLPG