Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_3933 |
Symbol | |
ID | 5672294 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 4702438 |
End bp | 4703286 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641242812 |
Product | GntR family transcriptional regulator |
Protein accession | YP_001508229 |
Protein GI | 158315721 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.903638 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00636181 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCGGGCCG GGTGGGCGGT TCGCCCGCGC CCCCGATCGA TCGATACGAT CGACGGGCTG CGGCCGCCTC GGCGCCGGGT GACGCGGTGG AGGTGTCTCC TTCAGCGGCG CCACCGCGTC GAAGGAGCCG CAATACCTCC CCAAGGTCGA GCCGCGTCGA CCGCGAGGCA GCGGCGTGCC GCGATCGACC GGCGCAGCAG CGGCGCCCAG GTGGCGGACT ACATCCGGAA CCTGATTTTC TCCGGTGAGC TGCGTCAGGG CGACCATGTC CGGCAGGACG AGATCGCGGA GGATCTCGGG GTGAGCCGGA TTCCCGTCCG CGAGGCCATC ATCGTCCTCG ACCAGGAGGG CTGGGTGACG AACGAGCTGC ACCGCGGCGC GTTCGTCCAC GGCCTGGACG AGAACTCCGT CCGCGACCAC TACGGGCTCA TCGGCCTGCT CTACGGCTAC GCCGCGCAGC GCGCCACCGA ACGCGGCGAC GACGACGGGC TGGCCCGGGT GCAGACGGCC GAGCGCGCGT TGCGGGCCGC GACCGATCCC ACCGCCGTCC GGGACGCGAA CGAGATGTTC CTGCGCCAGA TCTTCGCGCT CGCGCGGTCG TCACGCCTGA AGGCGATGAG CCGGCAGATG AACGGCATCA TCCCCGGCAA CTTCTTCGAG CTGGTGCCGG GGACGATCGA CCTGCAGAAG AAGGGGATCA CGGCGGTCTC CCGAGCCGTG CGGGCGCGTG ACGGGGAGCG CTCCAACGCG GCGTTCGTCT CGCTCCTCCA GCAGCACGGT GAGCGCGTCG TCGACCTGCT CCGGGCCCGC AACATCCTCT GGATCCCCGA CGAGGCCGCG ATGTCCTGA
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Protein sequence | MRAGWAVRPR PRSIDTIDGL RPPRRRVTRW RCLLQRRHRV EGAAIPPQGR AASTARQRRA AIDRRSSGAQ VADYIRNLIF SGELRQGDHV RQDEIAEDLG VSRIPVREAI IVLDQEGWVT NELHRGAFVH GLDENSVRDH YGLIGLLYGY AAQRATERGD DDGLARVQTA ERALRAATDP TAVRDANEMF LRQIFALARS SRLKAMSRQM NGIIPGNFFE LVPGTIDLQK KGITAVSRAV RARDGERSNA AFVSLLQQHG ERVVDLLRAR NILWIPDEAA MS
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