Gene Franean1_3933 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3933 
Symbol 
ID5672294 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4702438 
End bp4703286 
Gene Length849 bp 
Protein Length282 aa 
Translation table11 
GC content71% 
IMG OID641242812 
ProductGntR family transcriptional regulator 
Protein accessionYP_001508229 
Protein GI158315721 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.903638 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00636181 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCGGGCCG GGTGGGCGGT TCGCCCGCGC CCCCGATCGA TCGATACGAT CGACGGGCTG 
CGGCCGCCTC GGCGCCGGGT GACGCGGTGG AGGTGTCTCC TTCAGCGGCG CCACCGCGTC
GAAGGAGCCG CAATACCTCC CCAAGGTCGA GCCGCGTCGA CCGCGAGGCA GCGGCGTGCC
GCGATCGACC GGCGCAGCAG CGGCGCCCAG GTGGCGGACT ACATCCGGAA CCTGATTTTC
TCCGGTGAGC TGCGTCAGGG CGACCATGTC CGGCAGGACG AGATCGCGGA GGATCTCGGG
GTGAGCCGGA TTCCCGTCCG CGAGGCCATC ATCGTCCTCG ACCAGGAGGG CTGGGTGACG
AACGAGCTGC ACCGCGGCGC GTTCGTCCAC GGCCTGGACG AGAACTCCGT CCGCGACCAC
TACGGGCTCA TCGGCCTGCT CTACGGCTAC GCCGCGCAGC GCGCCACCGA ACGCGGCGAC
GACGACGGGC TGGCCCGGGT GCAGACGGCC GAGCGCGCGT TGCGGGCCGC GACCGATCCC
ACCGCCGTCC GGGACGCGAA CGAGATGTTC CTGCGCCAGA TCTTCGCGCT CGCGCGGTCG
TCACGCCTGA AGGCGATGAG CCGGCAGATG AACGGCATCA TCCCCGGCAA CTTCTTCGAG
CTGGTGCCGG GGACGATCGA CCTGCAGAAG AAGGGGATCA CGGCGGTCTC CCGAGCCGTG
CGGGCGCGTG ACGGGGAGCG CTCCAACGCG GCGTTCGTCT CGCTCCTCCA GCAGCACGGT
GAGCGCGTCG TCGACCTGCT CCGGGCCCGC AACATCCTCT GGATCCCCGA CGAGGCCGCG
ATGTCCTGA
 
Protein sequence
MRAGWAVRPR PRSIDTIDGL RPPRRRVTRW RCLLQRRHRV EGAAIPPQGR AASTARQRRA 
AIDRRSSGAQ VADYIRNLIF SGELRQGDHV RQDEIAEDLG VSRIPVREAI IVLDQEGWVT
NELHRGAFVH GLDENSVRDH YGLIGLLYGY AAQRATERGD DDGLARVQTA ERALRAATDP
TAVRDANEMF LRQIFALARS SRLKAMSRQM NGIIPGNFFE LVPGTIDLQK KGITAVSRAV
RARDGERSNA AFVSLLQQHG ERVVDLLRAR NILWIPDEAA MS