| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3901 |
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| Symbol | |
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| ID | 5672262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 4665120 |
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| End bp | 4666745 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641242780 |
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| Product | cholesterol oxidase |
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| Protein accession | YP_001508197 |
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| Protein GI | 158315689 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0511249 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGAAA ACACGCCCGA CGCCGTCGAA TCCACCCCCG GCCTCAACCG CAGGCACTTA
ATCGGCACGG CGGCGATCGG CGCCGCCGCG GTCGGCGGTT TCACCGCGGG ACCGGGTGCC
GTCCGGGCCC GGGCCGCCAC CCCCGTGCCG GCCACTGTGC AGCAGGAGCG GGCCGTTGTC
ATCGGGAGCG GCTTCGGCGG CGGCGTGACC GCGCTGCGGC TGGCCCAGGT AGGCGTGTCG
ACGCTGGTCC TGGAGCGCGG GCTGCGGTGG CCCACCGGGC CGAACGCAAC GACGTTCTGC
CGCTTCGCCA ACATCGACAA CCGCTCCGCC TGGCTGACCG ACCACGCCAC GGTCGGCGGC
GTGGTGAAGA CGTGGGAGCC CTACACCGGG GTGATCGAGA GCATTCCCGG CAACGGAATC
ACGGTGAACT GCGGGGCGGC CGTCGGCGGC GGCTCCCTCA TGTACCACGG CATGACACTG
AAGCCCTCGA AGGCGAACTT CGCCGCGTCG ATCCCGGTGG CCGCGAACCT CTACGACGAG
CTGAACCTGT GGGCGTATCC GCTGGTGGCC AGCATGCTGG GAGTCTCCAC GATTCCCAAC
GACATCCTGA ACAGCGACCC GTACAAGTCC TCCCGGCTCT TCCGGGACGT CGCTCCGGGC
GCGGGCCTGG AGCCGTTCCA GGTTCCCCTG CCGATCGACT GGCAGTACGT GCGCGGTGAG
CTGAACGGCC AGTACCAGCC GACCTACACC ACCAGCGACA TCGCCTTCGG GGTCAACAAC
GGCGGTAAGC GCTCCATCGA CGTCACCTAC CTCAAGGCGG CGGAGGCGAC CGGCCGGGTC
CGCGTCGCGA CGCTGCACGT CGTCCGCGAC ATCGCGCTCG ACGCGAACAA GAAGTGGGTA
CTGACGGTCG ACCGCATCAA CACCGGCGGC ATCGTCCAGG AGACGAAGAC CATCGTCGCG
GACGCGGTAT TCCTCAACGC GGGTTCCGCC GGCACGACCC GCCTGCTGGT GAAGTCCAAG
GCGAAGGGGC TTATCCCCAA CCTGCCGGAC GCCGTCGGAA CCCAGTGGGG AAACAACGGC
GACCGCATCT ACCTGTGGAA CGGCATGAAC GGCGACATCG GGACCCAGCA GGGTGGTCCC
GCCTGCGTCG GCGGTCGCGA CACCACCAGC TCGATCCCGC TCACCATCAT CCACGCGGGC
TCCCCCATTC CGAGTACCGC CGGCAAGCTG ATGACGGTCG TCGGCTTCGG GATCGTGAAC
CCCGCCGGCA CCTGGGCGTA CGACTCCGCG AAGGACGACG CCGTCCTGAC CTGGCCGTCC
AGCGGTGACG CCGCGCTGCA GGCGCTGATC GCCGCGCGCA TGCAGAAGAT CGCCCAGGTG
GGCGGCGGCA TCATGATCGA CACGAACGCC CAGGCGAACT CGACCTGGCA CGCCCTGGGC
GGCGTGCCCA TGGGGTCCGC GGTCGACCTC TACGGCCGGG TCATCGGCCA GAGTGGCCTC
TACGTGCTCG ACGGCGCGCG GATCCCGGGC TCCACCGGCG CCTGCAACCC GTCCATGACG
ATCGCGGCCC TCGCCGAGCA CAGCATGGCC AAGATCGTGC TCCAGGACGT CGGACGCGTC
TTCTAG
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| Protein sequence | MPENTPDAVE STPGLNRRHL IGTAAIGAAA VGGFTAGPGA VRARAATPVP ATVQQERAVV
IGSGFGGGVT ALRLAQVGVS TLVLERGLRW PTGPNATTFC RFANIDNRSA WLTDHATVGG
VVKTWEPYTG VIESIPGNGI TVNCGAAVGG GSLMYHGMTL KPSKANFAAS IPVAANLYDE
LNLWAYPLVA SMLGVSTIPN DILNSDPYKS SRLFRDVAPG AGLEPFQVPL PIDWQYVRGE
LNGQYQPTYT TSDIAFGVNN GGKRSIDVTY LKAAEATGRV RVATLHVVRD IALDANKKWV
LTVDRINTGG IVQETKTIVA DAVFLNAGSA GTTRLLVKSK AKGLIPNLPD AVGTQWGNNG
DRIYLWNGMN GDIGTQQGGP ACVGGRDTTS SIPLTIIHAG SPIPSTAGKL MTVVGFGIVN
PAGTWAYDSA KDDAVLTWPS SGDAALQALI AARMQKIAQV GGGIMIDTNA QANSTWHALG
GVPMGSAVDL YGRVIGQSGL YVLDGARIPG STGACNPSMT IAALAEHSMA KIVLQDVGRV
F
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