| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3356 |
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| Symbol | |
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| ID | 5671727 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 3973682 |
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| End bp | 3975316 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641242244 |
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| Product | cholesterol oxidase |
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| Protein accession | YP_001507664 |
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| Protein GI | 158315156 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGACA ACGCTTCCAC ACCTCTGGAA TCCGGCCCGG GGCTGACCCG CCGGAGGATC
CTCGGCACAG TGGCGCTTGG CGCGGCTGCG GCTGGTGGGC TGGCGGCCGG CCCTGGCAGC
GGACGGGCAC GGGCCGCCAC AGCCCCGGCG GACGCGGCCG TCACCGAGCA GCGGGAGCGG
GCCGTCGTCA TCGGCAGCGG ATTCGGCGGC GGCGTGACCG CGCTGCGGCT GGCACAGGCC
GGAGTGCCCA CTCTTGTCCT GGAGCGTGGC CTGCGGTGGT CGACGGGGCC GAACGCGACG
ACCTTCTGCC GCTGGGCGAA CATCGACAAC CGGTCCGCCT GGCTGACCGA CCACAGCACG
ACCCCGGGCG TGGACAAGAC CTGGACGCCC TACACCGGAG TGATCGAGAG CCTGCCGGGC
GACGGCATAA CGGTCAACTG CGGTGCCGGC GTCGGTGGCG GCTCGCTGGT GTACCACGGG
ATGACACTGC AGCCGACCAG CCAGAACTTC GCGGCATCCA TCCCGGAGGC CGCGAGTCTC
TACCGCGACC TGAACCGGTG GGCCTACCCC ACCGTCGCCA CCATGCTGGG CGTCTCCACG
GTGCCGAACG ACGTGCTGAA CGCGGATCAG TACCGGTCGT CCCGGCTCTT TCTGGACGTG
GCCGCCAACA GCGGCCTGGA GCCGTTCCGG GTTCCGCTGC CGGTCGACTG GAGCTACGTC
CGGGGTGAGC TCACCGGTCA GTACGAGCCG ACCTACACCA CCAGCGACAT CGTCTTCGGC
GTCAACAACG GCGGCAAGCA CTCGATCGAC GTCACCTACC TGGCCTCGGC CGAGGCCACG
GGCCGGGTAC GGGTGAGCCC ACTGCACGTG GTGCGGGACG TCCAGATGGA CCCGGACGGC
CGCTGGGTGC TCTCCGTCGA CCGCATCGAC ACCGGCGGCA CCGTGCAGGA GCGGAAGCGG
ATCACCGCGG ACGCGGTGTT CCTCAACGCC GGTTCCGCCG GTACCACGCG GCTCCTGGTC
AAGGCGCGAG CCAAGGGGCT GGTGCCCGAC CTCCCCGACG CCATCGGCAC GAAGTGGGGA
AACAACGGTG ATCGGATCTA CGCCTGGGTC GGCATGAACG GTGATCCTGG CACCCGGCAG
GGCGGCCCGG CGTGTGTGGG CGGCCGGGAC ACACAGGGGC CGATTCCGGC CACCGTCATC
CATGCGGGTG CGCCCGCCGA CACCGGCGGC GTGAAGCTGA TGACGGTCGT CGGTTTCGGG
ATCGTCGACG CCGCTGGCAC GTGGGCCTAC GACCCGAACA CGGATGACGC CAGGCTCACC
TGGCCGGCGA CCGGTGACGC CGCGCTCCAG ACCCAGATCG CCGCCCGGAT GCAGGCGATC
GTCGCCGCGG GTGGCGGGAT GATGATCGAC ACGAACGCCC AGGCGAACTC GACCTGGCAT
GCCCTGGGCG GGGTGCCGAT GGGATCGGCG GTCGACCTGT ACGGCCGGAT CATCGGCCAC
AAGGGCCTCT ACGTACTCGA CGGGTCGCGG ATCCCGGGCT CCACCGGTGC CTGTAACCCC
TCCATGACGA TCGCGGCCCT GGCCGAGCAC AGCATGTCCA CGATCATCCG TGAGGACGTC
GGACGTGTCT TCTGA
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| Protein sequence | MSDNASTPLE SGPGLTRRRI LGTVALGAAA AGGLAAGPGS GRARAATAPA DAAVTEQRER
AVVIGSGFGG GVTALRLAQA GVPTLVLERG LRWSTGPNAT TFCRWANIDN RSAWLTDHST
TPGVDKTWTP YTGVIESLPG DGITVNCGAG VGGGSLVYHG MTLQPTSQNF AASIPEAASL
YRDLNRWAYP TVATMLGVST VPNDVLNADQ YRSSRLFLDV AANSGLEPFR VPLPVDWSYV
RGELTGQYEP TYTTSDIVFG VNNGGKHSID VTYLASAEAT GRVRVSPLHV VRDVQMDPDG
RWVLSVDRID TGGTVQERKR ITADAVFLNA GSAGTTRLLV KARAKGLVPD LPDAIGTKWG
NNGDRIYAWV GMNGDPGTRQ GGPACVGGRD TQGPIPATVI HAGAPADTGG VKLMTVVGFG
IVDAAGTWAY DPNTDDARLT WPATGDAALQ TQIAARMQAI VAAGGGMMID TNAQANSTWH
ALGGVPMGSA VDLYGRIIGH KGLYVLDGSR IPGSTGACNP SMTIAALAEH SMSTIIREDV
GRVF
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