Gene Franean1_3185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3185 
Symbol 
ID5671561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp3752140 
End bp3752811 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content67% 
IMG OID641242079 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001507499 
Protein GI158314991 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.704721 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGCG TCCTCCTGGC CGATGACCAG GCCCTGCTGC GCATGGGTCT GCGCATCGTC 
ATTGACACCG AAGACGACCT CACCGTCATC GGGGAGGCCA GCGACGGAGC GGAGGCCGTC
CGCGCGGTCG CCGAGCTACA ACCCGACGTC GTCCTCATGG ATGTCCGCAT GCCCGGGGTC
GACGGCATCA CCGCCACCGC GCAGATCACC GCCCGGCACC CGGCCAGCAG GGTGCTGATC
CTGACCACCT TCGACGTCGA TCAGTACGTC TTCGACGGTC TGCGCGCCGG TGCCAGCGGC
TTCCTGCTCA AGGACGCCGC CCCGGGGGAG CTCGTCAACG CCATCCGCAC CGTCGCCCGG
GGCGATGCCG TACTCGGGCC CACCGCGGCA CGGCGTCTCG TCGATCGTTT CGCCGCGCTG
CCAGCCGACA GCGGATCAGA CCGCGCGGCC CGTCCCGAGA TCGTCCACGA TCTCACCGAA
CGGGAGCGTG AGGTGTTCCT GCTTGTCGCC CGCGGGTACT CGAACCGCGA GATCGCCGGC
AGACTCCACC TCTCCGAACA CACTGTAAAG GTCCACGTCG GCCGAATTCT GGCCAAACTC
GACCTACGCG ACCGCATCCA AGCCGTGGTT CTCGCCTACG AATCCGGGCT GGTTATTCCA
GAAATCGATT GA
 
Protein sequence
MIRVLLADDQ ALLRMGLRIV IDTEDDLTVI GEASDGAEAV RAVAELQPDV VLMDVRMPGV 
DGITATAQIT ARHPASRVLI LTTFDVDQYV FDGLRAGASG FLLKDAAPGE LVNAIRTVAR
GDAVLGPTAA RRLVDRFAAL PADSGSDRAA RPEIVHDLTE REREVFLLVA RGYSNREIAG
RLHLSEHTVK VHVGRILAKL DLRDRIQAVV LAYESGLVIP EID