| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3142 |
|---|
| Symbol | |
|---|
| ID | 5671519 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 3696450 |
|---|
| End bp | 3698150 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641242037 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001507457 |
|---|
| Protein GI | 158314949 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.429492 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACG CCGCTGAGCA GATTGAGCAG GTCCCCTCAC AGACAGAACG AGAGTTGGTT
AGTAGAACTC TGTTCAGGTG GGCCATCCTG GCCTGTACCG GCTATGGGGC GATCCTGCTC
GTCGTGGCGG TCGTCCTCCC CGACCGGGAC GCCGCCGCAC TCATAAAGCT GTCCCGGGCT
CTCGCGCTCC TGCTCGCCGG CCCGTGCTGC CTGTGGTGCG GCTGGCGTTC CCGCGGACCG
GAGCGTCTCT GGCGCGTACT CATGGGAGTC GCCTGCATCG GCGCCACCGC GGGCGTCGGC
GCCGCAGTCC GTTTCTCCCT GGAACACTAC CGGTACTCCG CCTGGGTTCC GCCGGTGAGC
TGGATACACA TGCTCTACCT GCTACCCTAT GCGGCGGTCC TGGCAGCGCT CTTAGTGTTC
CCCTCGACAC CGCTGACGGG TACTGCAGAC CGCACCTCGC ACAATGGCAG ATACTGGTAT
GTGGTCAGCA TTCTGGACAG CCTGCTCGTC GTCGGATCGC TCGGCGTCCT CGTGTGGGAG
ATCGGGCTCG GCGAGTTGTT CCAGGACAGG GGCGATCCGA CAGGACTGAT CGCCTTCGCG
GCCAGCAACG CTATCGTCAG CGCGACCGTC GTCGTCCTGC TCGTCCTGAT CGCTACGTTT
CGCCGGCCAC GGTCCCTGGC TGCGGCCACA CTACTCGCCA CGGGCCTGTT GGGAACGACC
TTCAGTACCG GGGTGTACCT GGTGGCGCGG GCGAACCACA TACAGCAGTT CGACCCGATA
TTACTTGTGG TTCCCGCGAC CGCTCCACTG ATAGTCGCGT TGTCCTGCCT TGTGCCGCCA
CCGCGCCGGG CCGGGCCCGC CCGCCGCGTG ATCTCACGCA CCATCTGGAT ACACACGGTG
CTGCCATACA TGTCGCTCGC GACGGTCGTT TTAATATTCA TTTTTCTCTG GGTTCTAGGC
AGCCACCAGA TCGGATTCGG ACAGATATGC ACACTTTCTG TGCTGCTGGT GCTGGCGCTG
GTCCGGCAGA TGATGACCAT GGCGGACAAC ACCCGTCTCA TTCTACAACT CCAGAACAGG
GAGCGCCTAT TGCACCATCA GGCATTCCAC GACCCCCTAA CCGGCCTGGC GAACCGGCTG
CTATTCACCG ACCGGCTCCA ACTGGCGCTC ACCCACTGTC TGCGCGACGG CCTACCATTC
GCTCTACTCT TCTGCGACAT CGACCGTTTC AAATGGATCA ACGATAACTT CGGACATGCT
GCGGGTGATG AACTGCTGAG AATCACAGCT ACACGCATGA CGAAATGCAC CCGGGTCTCC
GATACGGTCG CCCGACTCGG TGGTGATGAG TTCGCTATTC TCCTGACCGG TGGAGGAGTC
GGGCCGGAGA CGGTGAGCCG GCGCATCGTC GAGGCGATCC ACGCACCATG TACCATCGCC
GGGCAGCCCT ACCGGGTCAA AACCAGCGCC GGCCTGGTCA TCGCCACCGA AGCAGACGGA
CCGATGACGG CGGACATGCT GTTGTTTCAG GCCGACCTCG CCATGTATGA GGCCAAACGA
CAAGCATCGG AAAAGCTCGT AGTATACCAG CCAGAAATGT CGCTTGAAAC CGGGTATATT
TCGGCAGAAT GCCAGCAAAT GGCGGGCAGT CGCAGAAATG GCGCAAGCAG CATCGAACCG
CGACGCTATC GCACCTCCTG A
|
|---|
| Protein sequence | MTDAAEQIEQ VPSQTERELV SRTLFRWAIL ACTGYGAILL VVAVVLPDRD AAALIKLSRA
LALLLAGPCC LWCGWRSRGP ERLWRVLMGV ACIGATAGVG AAVRFSLEHY RYSAWVPPVS
WIHMLYLLPY AAVLAALLVF PSTPLTGTAD RTSHNGRYWY VVSILDSLLV VGSLGVLVWE
IGLGELFQDR GDPTGLIAFA ASNAIVSATV VVLLVLIATF RRPRSLAAAT LLATGLLGTT
FSTGVYLVAR ANHIQQFDPI LLVVPATAPL IVALSCLVPP PRRAGPARRV ISRTIWIHTV
LPYMSLATVV LIFIFLWVLG SHQIGFGQIC TLSVLLVLAL VRQMMTMADN TRLILQLQNR
ERLLHHQAFH DPLTGLANRL LFTDRLQLAL THCLRDGLPF ALLFCDIDRF KWINDNFGHA
AGDELLRITA TRMTKCTRVS DTVARLGGDE FAILLTGGGV GPETVSRRIV EAIHAPCTIA
GQPYRVKTSA GLVIATEADG PMTADMLLFQ ADLAMYEAKR QASEKLVVYQ PEMSLETGYI
SAECQQMAGS RRNGASSIEP RRYRTS
|
|---|
| |