| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1992 |
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| Symbol | |
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| ID | 5670393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 2394912 |
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| End bp | 2396000 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641240913 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001506335 |
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| Protein GI | 158313827 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00359465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.191358 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACT TCATATGTCG CGACTGGATT TTGATCCTTA CGTCGGCACG TTCATCGCCC
ATACCCCGCT GCGGATGTTC GTGCTGGGTC CGGAGAAGGG CGCGCTCGGT CTCGGTCAAC
GGCGCGGCGA TCTCCTGCGA CGGCACGGAC GTCGACGGCG CCTATCCCGT CGTGCTTGTC
CGGCCCACCG CACAGGGCTT CGGGTCCGCG GAGGTCGCGG GTCCGAATAG GGTTGCGGGC
AGTGGCGGAG GGGGCGCGCT GGGCTGGACT GGGCGGACCG TGGGCGGCAG AGGAGACGGC
GTGGATCTCG AGCTGGCAGG CAAGGTCGTC CTGATCACCG GCGGCTCGGA CGGGCTCGGC
GCCGCGTTGG TGCGTACCCT CGCCGCGGAG GGGGCGCGTG TCGCGTTCTG CGCCCGCGAC
GCGGACCGCC TCAACCGCCT CGCTGCCGAG GTGGCACCGA CCGCCGCGGC CGGCGCGGAG
TTCCTGCCCG TCCCCGCGGA CGTCACCCGC CTGGCCGACC TCGAGCGGTT CGTCGAGCAG
GCCGTCGGCC GCTGGGGGCG GATCGACGGC CTGGTGAACA ACGCCGGGCG CAGCGCCGCC
GGGCCGTTCG CGTCGCACAC CGACGAGGTC TGGGACGCCG ACCTGCAGCT CAAGGTGCAC
AGCACCGTCC GGCTGACCCG GTTGGCGCTG CCGCACCTGC GCGCGGCCGG CGGCGGCTCC
GTGATCAACA CGCTGGCCAT TGCCGCGAAG ACCCCCGGCG CCGGATCGAC CCCCACCTCG
GTCTCCCGGG CGGCCGGGCT CGCCCTCACC AAGGCGCTGT CCAAGGAACT CGGCCCGGAC
GGAATCCGGG TGAACGCGGT GCTGATCGGG CTGCTGGAGA GCGGCCAGTG GGACCGCCGC
GCAGCCGAGC AAGGCATCGG CGTGGACGAG CTGTACGCCG AGCTGAGCCG AGGCTCCGAC
ATCCCCCTCG GACGGGTCGG CCGCGCCCAG GACTTCGCCG ACCTCGCGGC CTTCCTGCTC
TCCCCCCGCG CCGGTTACCT GACCGGCGTC GGCATCAACC TCGACGGGGG CCTCTCGCCG
GCGCCCTGA
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| Protein sequence | MSDFICRDWI LILTSARSSP IPRCGCSCWV RRRARSVSVN GAAISCDGTD VDGAYPVVLV
RPTAQGFGSA EVAGPNRVAG SGGGGALGWT GRTVGGRGDG VDLELAGKVV LITGGSDGLG
AALVRTLAAE GARVAFCARD ADRLNRLAAE VAPTAAAGAE FLPVPADVTR LADLERFVEQ
AVGRWGRIDG LVNNAGRSAA GPFASHTDEV WDADLQLKVH STVRLTRLAL PHLRAAGGGS
VINTLAIAAK TPGAGSTPTS VSRAAGLALT KALSKELGPD GIRVNAVLIG LLESGQWDRR
AAEQGIGVDE LYAELSRGSD IPLGRVGRAQ DFADLAAFLL SPRAGYLTGV GINLDGGLSP
AP
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