Gene Franean1_1971 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_1971 
Symbol 
ID5670372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp2368677 
End bp2369327 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content72% 
IMG OID641240892 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001506314 
Protein GI158313806 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.356635 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.773651 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGCCG CGGGGACGCA CACGGTACGG GTCTTCCTCC TTGACGACCA CGAGATCGTC 
CGCCGTGGGG TCCGCGAGGT GCTCAGTGAC GCCAGCGGCA TCGAGGTCGT GGGCGAGGCG
TCGACCGGGG CCGAGGCGGC CGCCCTCGTC CCCCGCCTGC GGCCGGACGT CGCGCTGCTC
GACGCCCGGC TGGAGGACGG CAGCGGCATC GACGTCTGCC GGGACATCCA CGCGGCCTGC
CCGGAGGTCG GCTGTCTGAT CCTCACGTCC TACGACGACG ATGACGCGCT CTTCGCCGCG
ATCATGGCAG GGGCGGCGGG CTACCTGCTC AAGCAGATCC GCGGCACCGA CCTCGTGGGC
GCGATCCGGA CCATCGCGGC CGGCGGCTCC CTGCTCGACC CGGCCGTGAC CGCCAGGGTC
CTCGCCCGGC TCCGGGAGGG AACCGACGTG GGCCGGGCCT CGGCGGTGCT GAGCACCAGG
GAGCGGGAGA TCCTGGTCCT GATCGCCGAG GGCCTGACCA ACCGCCAGAT CGCCGGCCGG
CTGCACCTCT CCGAGAAGAC CGTGAAGAAC TACGTCTCGT CGATCCTCGA CAAGCTGGGC
CTGAGCAGCC GTACGCAGGC CGCCGTGTAC GCCGCGCGTC GCCACGCCTG A
 
Protein sequence
MDAAGTHTVR VFLLDDHEIV RRGVREVLSD ASGIEVVGEA STGAEAAALV PRLRPDVALL 
DARLEDGSGI DVCRDIHAAC PEVGCLILTS YDDDDALFAA IMAGAAGYLL KQIRGTDLVG
AIRTIAAGGS LLDPAVTARV LARLREGTDV GRASAVLSTR EREILVLIAE GLTNRQIAGR
LHLSEKTVKN YVSSILDKLG LSSRTQAAVY AARRHA