| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1700 |
|---|
| Symbol | |
|---|
| ID | 5670102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2032769 |
|---|
| End bp | 2033332 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641240618 |
|---|
| Product | shikimate kinase |
|---|
| Protein accession | YP_001506044 |
|---|
| Protein GI | 158313536 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.173109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.18068 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCGG AGAGCGGGGC GCGGGCCGAC GGGCCGGGGG CAGCTGTGTC CGGCCCGGTC
GCCGTGCTGG TCGGCGCGCC GGGGGCGGGT AAGAGCACCG TCGGTATAGC GGTCGCGGCG
CGCCTCGGGG TGGCCTTCCG TGACACCGAC GCCGATGTCG AGTCGAACCT CGGAATGAGC
GTCTCGGACG TGTTCCTGGA GCACGGCGAG GAGTACTTCC GCGCGGCGGA GCGGGCGGCG
GTGCTGACCG CCCTGGCCGA GCACCCGGGT GTGCTCGCCC TGGGCGGCGG GGCCGTGCTG
GACGCCGGCG TCCGCGCCGA GCTGGCCCGG CACTGGGTCG TCTACCTTGA CGTGACCGCG
TCTGACGCGG CGAAGCGGGT CGGGCTCGCG CGCGACCGGC CGCTGCTCGT GGAGGGCCCG
CGGACCCGGC TGGCCGCGCT GCTGAAGGCC CGCCGTCCGC TGTACGAGGA GGTGGCCGCG
ATCACCGTGG ACACCGCCGC CCTCGGGATC GACGACGTCG TCGCCGCGAT CCTGATCGAG
CTCGCCGGGA GGGCGGGGCA CTGA
|
|---|
| Protein sequence | MRAESGARAD GPGAAVSGPV AVLVGAPGAG KSTVGIAVAA RLGVAFRDTD ADVESNLGMS
VSDVFLEHGE EYFRAAERAA VLTALAEHPG VLALGGGAVL DAGVRAELAR HWVVYLDVTA
SDAAKRVGLA RDRPLLVEGP RTRLAALLKA RRPLYEEVAA ITVDTAALGI DDVVAAILIE
LAGRAGH
|
|---|
| |