| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1597 |
|---|
| Symbol | |
|---|
| ID | 5670000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1908260 |
|---|
| End bp | 1909522 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641240516 |
|---|
| Product | pyruvate dehydrogenase (acetyl-transferring) |
|---|
| Protein accession | YP_001505942 |
|---|
| Protein GI | 158313434 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
|---|
| TIGRFAM ID | [TIGR03181] pyruvate dehydrogenase E1 component, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.225832 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCC TCGACGCCAG CGCCGCGTCC GGCCTCGCCG GGCCGCCGGG CTCCCACGGC
CCGACCGACC GCGGTCCGGT CTACCACGGT CCGCGGCGTG ACCCGGCGCC GTTGCTGCCT
GGTCCCGAAC CGGCCCGGGT GCTCGGCACG CCGGCGGCGC GGGCGCTCGA CGCCGAGCTG
CTGCGCGCGC TCCACCGCCG CCTGGTGCTG GGACGTCGCT ACAACCAGCA GGCCACCACC
CTGGCCCGGC AGGGCCGCAT CGCGGTCTAT CCGGCCTCCA CCGGGCAGGA GGCGTGCCAG
ATCGCCCCGG CGATGGTGCT GCGGGAGACG GACTGGCTGT TCCCGACCTA CCGCGACACG
CTGGCGGTGG TGTCGCGCGG GGTGCGGCCG GCGGACGTCC TGGCCATGAT GCGGGGGCAC
ACGCATGGTG GGTACGACCC GCGGGAGCAC CGGATCGCGC CGCTGGCGAC CCCGCTGGCC
ACCCAGGCCT GCCACGCGGT CGGGCTGGCG CATGCCGCCC GGCTGCGCGC GGCGTCGGAC
CCGGGGGCGC CGCGGGACGT CGTGGCGCTC GCCCTCGTCG GCGACGGTGC CACCAGCGAG
GGTGACTTCC ACGAGGCGCT GACCTTCGCG GGGGTGCTGA ACGCACCGGT GGTGTTCCTG
GTGCAGAACA ACGGCTACGC GATCTCGGTG CCGCTGGCGC GGCAGTCCGC GGCGCCGACG
CTGGCACACA AGGCGGTGGG TTACGGCGTC ATCGGACGTC TCGTCGACGG TAACGACGCG
CCGGCGGTGC ACACCGTGCT CGGCGCCGCG GTCGAGCACG CGCGGGCGGG GCGGGGGCCG
GTGCTGGTCG AGGCGGTCAC CTACCGGATG GACGCGCACA CCAGCGCCGA CGACGCGACC
CGCTACCGCA CGGCGCAGGA GGTCGCCTCC TGGCAGGCCC GGGATCCGGT GACACTGCTC
GAGCGGCATC TTCGCGACGC CGGCCTCCTC GACGACGCCG CGGCCGCCGC CGTGGCCGCG
GCGGCCGAGG AGCTCGCCGC CGAGATGCGC TCCGAGTTCG GCGCCGAGCC TCCCGAGGTG
GACCCGGGCT CGCTGTTCGC GCACGTCTAC GCCCGTCCGA CCAGCCAGCT GCGGGAGCAG
GCCGCCGAAC TGGCCGCCCG CATCGCCGCC GAGACCGACC ACGCGGGCAC CAACCAGGCG
GGCACCAACC AGGCGGGCAC CGACCAGGCA GGCACCGGCC CGGCCGGGGG CGAGGCCCGG
TGA
|
|---|
| Protein sequence | MTILDASAAS GLAGPPGSHG PTDRGPVYHG PRRDPAPLLP GPEPARVLGT PAARALDAEL
LRALHRRLVL GRRYNQQATT LARQGRIAVY PASTGQEACQ IAPAMVLRET DWLFPTYRDT
LAVVSRGVRP ADVLAMMRGH THGGYDPREH RIAPLATPLA TQACHAVGLA HAARLRAASD
PGAPRDVVAL ALVGDGATSE GDFHEALTFA GVLNAPVVFL VQNNGYAISV PLARQSAAPT
LAHKAVGYGV IGRLVDGNDA PAVHTVLGAA VEHARAGRGP VLVEAVTYRM DAHTSADDAT
RYRTAQEVAS WQARDPVTLL ERHLRDAGLL DDAAAAAVAA AAEELAAEMR SEFGAEPPEV
DPGSLFAHVY ARPTSQLREQ AAELAARIAA ETDHAGTNQA GTNQAGTDQA GTGPAGGEAR
|
|---|
| |