| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1237 |
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| Symbol | |
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| ID | 5669650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | + |
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| Start bp | 1484052 |
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| End bp | 1485323 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641240169 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001505597 |
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| Protein GI | 158313089 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.002863 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCTGC CTGCCCTGGA ACTAGCCGAG CGCACCGACG AGTCACGCCC GCGCCCGCGG
CGTACCCGTC GCTCCGCTTC TCCTGTCCGT AACACTCCAA GCCGCACGCT GGCCGCGGTC
CCCGACGAGC TCGACGAGCT CGACGTCTCC GCCATCGCGG AACTCATCGC GCGTGGCCGC
GAGACCGGCG AGCTCAGCCG TTCCGAGCTC CGTGAGGCTC TCGAGGCCGC CGACATCGGC
GTCGAGCTGC TGCCCGCGCT GATCTCCCGC CTGGGTGCCG CCGGGATCGA CCTCGTCGAA
GAAGAAGAGG AGCGCGTCAC CCCCGGCGCT CCGGCCGCCG GCCGCACGGT CGCCGACCAC
GCCGGCACCG CCGACCTCGT CCGCATGTAC TTGCGGGAGA TCGGCAAGGT CCCGCTGCTC
AACGCCGCTC AGGAGGTCGA GCTCTCCAAG CGCGTCGAGG CGGGCCTGTT CGCCGAGCAC
AAGCTCGACA CCGACCAGGA CCTGGCCGAC GACCTGCGCC GGGATCTCGG CGTGCTGGTC
ACCGACGGCC AGGCTGCCAA GCAGCAGCTG GTCTCGGCCA ACCTGCGCCT GGTGGTGTCG
GTCGCCAAGA AGTACAGCGG CCGGGGTATG ACGCTGCTGG ACCTCGTCCA GGAGGGAAAC
CTGGGCCTGA TCCGCGCGGT CGAGAAGTTC GACTACGCGA AGGGCTACAA GTTCTCCACC
TACGCCACCT GGTGGATCCG TCAGGCGATC GGCCGCGCGC TGGCCGACCA GGCCCGCACG
ATCCGTATCC CGGTGCACGT GGTCGAGCAG ATCAACAAGA TCACCCGGCT GCAGCGCCAG
CTTGTCTCGA CCCTCGGCCG CGAGCCGACG GACGAGGAGC TCGCGCTCGA GCTGGACATG
CCGATCGAGC AGGTCGTCGA ACTGCGCCGC TACGCGCAGG ACACGGTCAG CCTGGAGACG
TCCGTCGGTG ACGACGGCGA CTCCGTGCTC GGCGACTTCA TCGAGGACTC GGACGCGACG
TCGCCCGCCG ACGCCGCCTC CTACGGCGCC ATGCAGGACG AGATCGACAA CGTCCTCGGT
GCGCTGAACC CTCGTGAGCG CGAGGTCATG CGGCTGCGTT TCGGGCTCGC CGACGGGAAG
CAGCACACCC TCGCCGAGGT CGGCAACCGG CTCGGGCTCA CCCGTGAGCG CATCCGCCAG
ATCGAGCGGG ACACGCTGCG GGAGCTGCGC AAGCCGGCCG TGGCCGGAAG GCTGCGCGAG
TTCCTCGACT GA
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| Protein sequence | MTLPALELAE RTDESRPRPR RTRRSASPVR NTPSRTLAAV PDELDELDVS AIAELIARGR
ETGELSRSEL REALEAADIG VELLPALISR LGAAGIDLVE EEEERVTPGA PAAGRTVADH
AGTADLVRMY LREIGKVPLL NAAQEVELSK RVEAGLFAEH KLDTDQDLAD DLRRDLGVLV
TDGQAAKQQL VSANLRLVVS VAKKYSGRGM TLLDLVQEGN LGLIRAVEKF DYAKGYKFST
YATWWIRQAI GRALADQART IRIPVHVVEQ INKITRLQRQ LVSTLGREPT DEELALELDM
PIEQVVELRR YAQDTVSLET SVGDDGDSVL GDFIEDSDAT SPADAASYGA MQDEIDNVLG
ALNPREREVM RLRFGLADGK QHTLAEVGNR LGLTRERIRQ IERDTLRELR KPAVAGRLRE
FLD
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